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Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records
BACKGROUND AND OBJECTIVE: Several studies have demonstrated the ability to detect adverse events potentially related to multiple drug exposure via data mining. However, the number of putative associations produced by such computational approaches is typically large, making experimental validation di...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4712252/ https://www.ncbi.nlm.nih.gov/pubmed/26446143 http://dx.doi.org/10.1007/s40264-015-0352-2 |
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author | Banda, Juan M. Callahan, Alison Winnenburg, Rainer Strasberg, Howard R. Cami, Aurel Reis, Ben Y. Vilar, Santiago Hripcsak, George Dumontier, Michel Shah, Nigam Haresh |
author_facet | Banda, Juan M. Callahan, Alison Winnenburg, Rainer Strasberg, Howard R. Cami, Aurel Reis, Ben Y. Vilar, Santiago Hripcsak, George Dumontier, Michel Shah, Nigam Haresh |
author_sort | Banda, Juan M. |
collection | PubMed |
description | BACKGROUND AND OBJECTIVE: Several studies have demonstrated the ability to detect adverse events potentially related to multiple drug exposure via data mining. However, the number of putative associations produced by such computational approaches is typically large, making experimental validation difficult. We theorized that those potential associations for which there is evidence from multiple complementary sources are more likely to be true, and explored this idea using a published database of drug–drug-adverse event associations derived from electronic health records (EHRs). METHODS: We prioritized drug–drug-event associations derived from EHRs using four sources of information: (1) public databases, (2) sources of spontaneous reports, (3) literature, and (4) non-EHR drug–drug interaction (DDI) prediction methods. After pre-filtering the associations by removing those found in public databases, we devised a ranking for associations based on the support from the remaining sources, and evaluated the results of this rank-based prioritization. RESULTS: We collected information for 5983 putative EHR-derived drug–drug-event associations involving 345 drugs and ten adverse events from four data sources and four prediction methods. Only seven drug–drug-event associations (<0.5 %) had support from the majority of evidence sources, and about one third (1777) had support from at least one of the evidence sources. CONCLUSIONS: Our proof-of-concept method for scoring putative drug–drug-event associations from EHRs offers a systematic and reproducible way of prioritizing associations for further study. Our findings also quantify the agreement (or lack thereof) among complementary sources of evidence for drug–drug-event associations and highlight the challenges of developing a robust approach for prioritizing signals of these associations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s40264-015-0352-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4712252 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-47122522016-01-19 Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records Banda, Juan M. Callahan, Alison Winnenburg, Rainer Strasberg, Howard R. Cami, Aurel Reis, Ben Y. Vilar, Santiago Hripcsak, George Dumontier, Michel Shah, Nigam Haresh Drug Saf Original Research Article BACKGROUND AND OBJECTIVE: Several studies have demonstrated the ability to detect adverse events potentially related to multiple drug exposure via data mining. However, the number of putative associations produced by such computational approaches is typically large, making experimental validation difficult. We theorized that those potential associations for which there is evidence from multiple complementary sources are more likely to be true, and explored this idea using a published database of drug–drug-adverse event associations derived from electronic health records (EHRs). METHODS: We prioritized drug–drug-event associations derived from EHRs using four sources of information: (1) public databases, (2) sources of spontaneous reports, (3) literature, and (4) non-EHR drug–drug interaction (DDI) prediction methods. After pre-filtering the associations by removing those found in public databases, we devised a ranking for associations based on the support from the remaining sources, and evaluated the results of this rank-based prioritization. RESULTS: We collected information for 5983 putative EHR-derived drug–drug-event associations involving 345 drugs and ten adverse events from four data sources and four prediction methods. Only seven drug–drug-event associations (<0.5 %) had support from the majority of evidence sources, and about one third (1777) had support from at least one of the evidence sources. CONCLUSIONS: Our proof-of-concept method for scoring putative drug–drug-event associations from EHRs offers a systematic and reproducible way of prioritizing associations for further study. Our findings also quantify the agreement (or lack thereof) among complementary sources of evidence for drug–drug-event associations and highlight the challenges of developing a robust approach for prioritizing signals of these associations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s40264-015-0352-2) contains supplementary material, which is available to authorized users. Springer International Publishing 2015-10-08 2016 /pmc/articles/PMC4712252/ /pubmed/26446143 http://dx.doi.org/10.1007/s40264-015-0352-2 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License (http://creativecommons.org/licenses/by-nc/4.0/), which permits any noncommercial use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Research Article Banda, Juan M. Callahan, Alison Winnenburg, Rainer Strasberg, Howard R. Cami, Aurel Reis, Ben Y. Vilar, Santiago Hripcsak, George Dumontier, Michel Shah, Nigam Haresh Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records |
title | Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records |
title_full | Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records |
title_fullStr | Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records |
title_full_unstemmed | Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records |
title_short | Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records |
title_sort | feasibility of prioritizing drug–drug-event associations found in electronic health records |
topic | Original Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4712252/ https://www.ncbi.nlm.nih.gov/pubmed/26446143 http://dx.doi.org/10.1007/s40264-015-0352-2 |
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