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Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing

Retinal dystrophies (RD) constitute a group of blinding diseases that are characterized by clinical variability and pronounced genetic heterogeneity. The different nonsyndromic and syndromic forms of RD can be attributed to mutations in more than 200 genes. Consequently, next generation sequencing (...

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Autores principales: Weisschuh, Nicole, Mayer, Anja K., Strom, Tim M., Kohl, Susanne, Glöckle, Nicola, Schubach, Max, Andreasson, Sten, Bernd, Antje, Birch, David G., Hamel, Christian P., Heckenlively, John R., Jacobson, Samuel G., Kamme, Christina, Kellner, Ulrich, Kunstmann, Erdmute, Maffei, Pietro, Reiff, Charlotte M., Rohrschneider, Klaus, Rosenberg, Thomas, Rudolph, Günther, Vámos, Rita, Varsányi, Balázs, Weleber, Richard G., Wissinger, Bernd
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4713063/
https://www.ncbi.nlm.nih.gov/pubmed/26766544
http://dx.doi.org/10.1371/journal.pone.0145951
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author Weisschuh, Nicole
Mayer, Anja K.
Strom, Tim M.
Kohl, Susanne
Glöckle, Nicola
Schubach, Max
Andreasson, Sten
Bernd, Antje
Birch, David G.
Hamel, Christian P.
Heckenlively, John R.
Jacobson, Samuel G.
Kamme, Christina
Kellner, Ulrich
Kunstmann, Erdmute
Maffei, Pietro
Reiff, Charlotte M.
Rohrschneider, Klaus
Rosenberg, Thomas
Rudolph, Günther
Vámos, Rita
Varsányi, Balázs
Weleber, Richard G.
Wissinger, Bernd
author_facet Weisschuh, Nicole
Mayer, Anja K.
Strom, Tim M.
Kohl, Susanne
Glöckle, Nicola
Schubach, Max
Andreasson, Sten
Bernd, Antje
Birch, David G.
Hamel, Christian P.
Heckenlively, John R.
Jacobson, Samuel G.
Kamme, Christina
Kellner, Ulrich
Kunstmann, Erdmute
Maffei, Pietro
Reiff, Charlotte M.
Rohrschneider, Klaus
Rosenberg, Thomas
Rudolph, Günther
Vámos, Rita
Varsányi, Balázs
Weleber, Richard G.
Wissinger, Bernd
author_sort Weisschuh, Nicole
collection PubMed
description Retinal dystrophies (RD) constitute a group of blinding diseases that are characterized by clinical variability and pronounced genetic heterogeneity. The different nonsyndromic and syndromic forms of RD can be attributed to mutations in more than 200 genes. Consequently, next generation sequencing (NGS) technologies are among the most promising approaches to identify mutations in RD. We screened a large cohort of patients comprising 89 independent cases and families with various subforms of RD applying different NGS platforms. While mutation screening in 50 cases was performed using a RD gene capture panel, 47 cases were analyzed using whole exome sequencing. One family was analyzed using whole genome sequencing. A detection rate of 61% was achieved including mutations in 34 known and two novel RD genes. A total of 69 distinct mutations were identified, including 39 novel mutations. Notably, genetic findings in several families were not consistent with the initial clinical diagnosis. Clinical reassessment resulted in refinement of the clinical diagnosis in some of these families and confirmed the broad clinical spectrum associated with mutations in RD genes.
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spelling pubmed-47130632016-01-26 Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing Weisschuh, Nicole Mayer, Anja K. Strom, Tim M. Kohl, Susanne Glöckle, Nicola Schubach, Max Andreasson, Sten Bernd, Antje Birch, David G. Hamel, Christian P. Heckenlively, John R. Jacobson, Samuel G. Kamme, Christina Kellner, Ulrich Kunstmann, Erdmute Maffei, Pietro Reiff, Charlotte M. Rohrschneider, Klaus Rosenberg, Thomas Rudolph, Günther Vámos, Rita Varsányi, Balázs Weleber, Richard G. Wissinger, Bernd PLoS One Research Article Retinal dystrophies (RD) constitute a group of blinding diseases that are characterized by clinical variability and pronounced genetic heterogeneity. The different nonsyndromic and syndromic forms of RD can be attributed to mutations in more than 200 genes. Consequently, next generation sequencing (NGS) technologies are among the most promising approaches to identify mutations in RD. We screened a large cohort of patients comprising 89 independent cases and families with various subforms of RD applying different NGS platforms. While mutation screening in 50 cases was performed using a RD gene capture panel, 47 cases were analyzed using whole exome sequencing. One family was analyzed using whole genome sequencing. A detection rate of 61% was achieved including mutations in 34 known and two novel RD genes. A total of 69 distinct mutations were identified, including 39 novel mutations. Notably, genetic findings in several families were not consistent with the initial clinical diagnosis. Clinical reassessment resulted in refinement of the clinical diagnosis in some of these families and confirmed the broad clinical spectrum associated with mutations in RD genes. Public Library of Science 2016-01-14 /pmc/articles/PMC4713063/ /pubmed/26766544 http://dx.doi.org/10.1371/journal.pone.0145951 Text en © 2016 Weisschuh et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Weisschuh, Nicole
Mayer, Anja K.
Strom, Tim M.
Kohl, Susanne
Glöckle, Nicola
Schubach, Max
Andreasson, Sten
Bernd, Antje
Birch, David G.
Hamel, Christian P.
Heckenlively, John R.
Jacobson, Samuel G.
Kamme, Christina
Kellner, Ulrich
Kunstmann, Erdmute
Maffei, Pietro
Reiff, Charlotte M.
Rohrschneider, Klaus
Rosenberg, Thomas
Rudolph, Günther
Vámos, Rita
Varsányi, Balázs
Weleber, Richard G.
Wissinger, Bernd
Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing
title Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing
title_full Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing
title_fullStr Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing
title_full_unstemmed Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing
title_short Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing
title_sort mutation detection in patients with retinal dystrophies using targeted next generation sequencing
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4713063/
https://www.ncbi.nlm.nih.gov/pubmed/26766544
http://dx.doi.org/10.1371/journal.pone.0145951
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