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The complete mitochondrial genome of Lerema accius and its phylogenetic implications
Butterflies and moths (Lepidoptera) are becoming model organisms for genetics and evolutionary biology. Decoding the Lepidoptera genomes, both nuclear and mitochondrial, is an essential step in these studies. Here we describe a protocol to assemble mitogenomes from Next Generation Sequencing reads o...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4715447/ https://www.ncbi.nlm.nih.gov/pubmed/26788426 http://dx.doi.org/10.7717/peerj.1546 |
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author | Cong, Qian Grishin, Nick V. |
author_facet | Cong, Qian Grishin, Nick V. |
author_sort | Cong, Qian |
collection | PubMed |
description | Butterflies and moths (Lepidoptera) are becoming model organisms for genetics and evolutionary biology. Decoding the Lepidoptera genomes, both nuclear and mitochondrial, is an essential step in these studies. Here we describe a protocol to assemble mitogenomes from Next Generation Sequencing reads obtained through whole-genome sequencing and report the 15,338 bp mitogenome of Lerema accius. The mitogenome is AT-rich and encodes 13 proteins, 22 transfer-RNAs, and two ribosomal-RNAs, with a gene order typical for Lepidoptera mitogenomes. A phylogenetic study based on the protein sequences using both Bayesian Inference and Maximum Likelihood methods consistently place Lerema accius with other grass skippers (Hesperiinae). |
format | Online Article Text |
id | pubmed-4715447 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-47154472016-01-19 The complete mitochondrial genome of Lerema accius and its phylogenetic implications Cong, Qian Grishin, Nick V. PeerJ Entomology Butterflies and moths (Lepidoptera) are becoming model organisms for genetics and evolutionary biology. Decoding the Lepidoptera genomes, both nuclear and mitochondrial, is an essential step in these studies. Here we describe a protocol to assemble mitogenomes from Next Generation Sequencing reads obtained through whole-genome sequencing and report the 15,338 bp mitogenome of Lerema accius. The mitogenome is AT-rich and encodes 13 proteins, 22 transfer-RNAs, and two ribosomal-RNAs, with a gene order typical for Lepidoptera mitogenomes. A phylogenetic study based on the protein sequences using both Bayesian Inference and Maximum Likelihood methods consistently place Lerema accius with other grass skippers (Hesperiinae). PeerJ Inc. 2016-01-07 /pmc/articles/PMC4715447/ /pubmed/26788426 http://dx.doi.org/10.7717/peerj.1546 Text en ©2016 Cong and Grishin http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Entomology Cong, Qian Grishin, Nick V. The complete mitochondrial genome of Lerema accius and its phylogenetic implications |
title | The complete mitochondrial genome of Lerema accius and its phylogenetic implications |
title_full | The complete mitochondrial genome of Lerema accius and its phylogenetic implications |
title_fullStr | The complete mitochondrial genome of Lerema accius and its phylogenetic implications |
title_full_unstemmed | The complete mitochondrial genome of Lerema accius and its phylogenetic implications |
title_short | The complete mitochondrial genome of Lerema accius and its phylogenetic implications |
title_sort | complete mitochondrial genome of lerema accius and its phylogenetic implications |
topic | Entomology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4715447/ https://www.ncbi.nlm.nih.gov/pubmed/26788426 http://dx.doi.org/10.7717/peerj.1546 |
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