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(1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer
BACKGROUND: Metabolomics has shown promise in gastric cancer (GC) detection. This research sought to identify whether GC has a unique urinary metabolomic profile compared with benign gastric disease (BN) and healthy (HE) patients. METHODS: Urine from 43 GC, 40 BN, and 40 matched HE patients was anal...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716538/ https://www.ncbi.nlm.nih.gov/pubmed/26645240 http://dx.doi.org/10.1038/bjc.2015.414 |
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author | Chan, Angela W Mercier, Pascal Schiller, Daniel Bailey, Robert Robbins, Sarah Eurich, Dean T Sawyer, Michael B Broadhurst, David |
author_facet | Chan, Angela W Mercier, Pascal Schiller, Daniel Bailey, Robert Robbins, Sarah Eurich, Dean T Sawyer, Michael B Broadhurst, David |
author_sort | Chan, Angela W |
collection | PubMed |
description | BACKGROUND: Metabolomics has shown promise in gastric cancer (GC) detection. This research sought to identify whether GC has a unique urinary metabolomic profile compared with benign gastric disease (BN) and healthy (HE) patients. METHODS: Urine from 43 GC, 40 BN, and 40 matched HE patients was analysed using (1)H nuclear magnetic resonance ((1)H-NMR) spectroscopy, generating 77 reproducible metabolites (QC-RSD <25%). Univariate and multivariate (MVA) statistics were employed. A parsimonious biomarker profile of GC vs HE was investigated using LASSO regularised logistic regression (LASSO-LR). Model performance was assessed using Receiver Operating Characteristic (ROC) curves. RESULTS: GC displayed a clear discriminatory biomarker profile; the BN profile overlapped with GC and HE. LASSO-LR identified three discriminatory metabolites: 2-hydroxyisobutyrate, 3-indoxylsulfate, and alanine, which produced a discriminatory model with an area under the ROC of 0.95. CONCLUSIONS: GC patients have a distinct urinary metabolite profile. This study shows clinical potential for metabolic profiling for early GC diagnosis. |
format | Online Article Text |
id | pubmed-4716538 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-47165382017-01-12 (1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer Chan, Angela W Mercier, Pascal Schiller, Daniel Bailey, Robert Robbins, Sarah Eurich, Dean T Sawyer, Michael B Broadhurst, David Br J Cancer Molecular Diagnostics BACKGROUND: Metabolomics has shown promise in gastric cancer (GC) detection. This research sought to identify whether GC has a unique urinary metabolomic profile compared with benign gastric disease (BN) and healthy (HE) patients. METHODS: Urine from 43 GC, 40 BN, and 40 matched HE patients was analysed using (1)H nuclear magnetic resonance ((1)H-NMR) spectroscopy, generating 77 reproducible metabolites (QC-RSD <25%). Univariate and multivariate (MVA) statistics were employed. A parsimonious biomarker profile of GC vs HE was investigated using LASSO regularised logistic regression (LASSO-LR). Model performance was assessed using Receiver Operating Characteristic (ROC) curves. RESULTS: GC displayed a clear discriminatory biomarker profile; the BN profile overlapped with GC and HE. LASSO-LR identified three discriminatory metabolites: 2-hydroxyisobutyrate, 3-indoxylsulfate, and alanine, which produced a discriminatory model with an area under the ROC of 0.95. CONCLUSIONS: GC patients have a distinct urinary metabolite profile. This study shows clinical potential for metabolic profiling for early GC diagnosis. Nature Publishing Group 2016-01-12 2015-12-08 /pmc/articles/PMC4716538/ /pubmed/26645240 http://dx.doi.org/10.1038/bjc.2015.414 Text en Copyright © 2016 Cancer Research UK http://creativecommons.org/licenses/by-nc-sa/4.0/ From twelve months after its original publication, this work is licensed under the Creative Commons Attribution-NonCommercial-Share Alike 4.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/ |
spellingShingle | Molecular Diagnostics Chan, Angela W Mercier, Pascal Schiller, Daniel Bailey, Robert Robbins, Sarah Eurich, Dean T Sawyer, Michael B Broadhurst, David (1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer |
title | (1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer |
title_full | (1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer |
title_fullStr | (1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer |
title_full_unstemmed | (1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer |
title_short | (1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer |
title_sort | (1)h-nmr urinary metabolomic profiling for diagnosis of gastric cancer |
topic | Molecular Diagnostics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716538/ https://www.ncbi.nlm.nih.gov/pubmed/26645240 http://dx.doi.org/10.1038/bjc.2015.414 |
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