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Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)
PREMISE OF THE STUDY: Senna spectabilis var. excelsa (Fabaceae) is a South and Central American tree of great ecological importance and one of the most common species in several sites of seasonally dry forests. Our goal was to develop microsatellite markers to assess the genetic diversity and struct...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716775/ https://www.ncbi.nlm.nih.gov/pubmed/26819856 http://dx.doi.org/10.3732/apps.1500062 |
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author | López-Roberts, M. Cristina Barbosa, Ariane R. Paganucci de Queiroz, Luciano van den Berg, Cássio |
author_facet | López-Roberts, M. Cristina Barbosa, Ariane R. Paganucci de Queiroz, Luciano van den Berg, Cássio |
author_sort | López-Roberts, M. Cristina |
collection | PubMed |
description | PREMISE OF THE STUDY: Senna spectabilis var. excelsa (Fabaceae) is a South and Central American tree of great ecological importance and one of the most common species in several sites of seasonally dry forests. Our goal was to develop microsatellite markers to assess the genetic diversity and structure of this species. METHODS AND RESULTS: We designed and assessed 53 loci obtained from a microsatellite-enriched library and an intersimple sequence repeat library. Fourteen loci were polymorphic, and they presented a total of 39 alleles in a sample of 61 individuals from six populations. The mean values of observed and expected heterozygosities were 0.355 and 0.479, respectively. Polymorphism information content was 0.390 and the Shannon index was 0.778. CONCLUSIONS: Polymorphism information content and Shannon index indicate that at least nine of the 14 microsatellite loci developed are moderate to highly informative, and potentially useful for population genetic studies in this species. |
format | Online Article Text |
id | pubmed-4716775 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-47167752016-01-27 Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) López-Roberts, M. Cristina Barbosa, Ariane R. Paganucci de Queiroz, Luciano van den Berg, Cássio Appl Plant Sci Primer Note PREMISE OF THE STUDY: Senna spectabilis var. excelsa (Fabaceae) is a South and Central American tree of great ecological importance and one of the most common species in several sites of seasonally dry forests. Our goal was to develop microsatellite markers to assess the genetic diversity and structure of this species. METHODS AND RESULTS: We designed and assessed 53 loci obtained from a microsatellite-enriched library and an intersimple sequence repeat library. Fourteen loci were polymorphic, and they presented a total of 39 alleles in a sample of 61 individuals from six populations. The mean values of observed and expected heterozygosities were 0.355 and 0.479, respectively. Polymorphism information content was 0.390 and the Shannon index was 0.778. CONCLUSIONS: Polymorphism information content and Shannon index indicate that at least nine of the 14 microsatellite loci developed are moderate to highly informative, and potentially useful for population genetic studies in this species. Botanical Society of America 2016-01-11 /pmc/articles/PMC4716775/ /pubmed/26819856 http://dx.doi.org/10.3732/apps.1500062 Text en © 2016 López-Roberts et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note López-Roberts, M. Cristina Barbosa, Ariane R. Paganucci de Queiroz, Luciano van den Berg, Cássio Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) |
title | Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) |
title_full | Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) |
title_fullStr | Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) |
title_full_unstemmed | Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) |
title_short | Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) |
title_sort | microsatellite markers for senna spectabilis var. excelsa (caesalpinioideae, fabaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716775/ https://www.ncbi.nlm.nih.gov/pubmed/26819856 http://dx.doi.org/10.3732/apps.1500062 |
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