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Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)

PREMISE OF THE STUDY: Senna spectabilis var. excelsa (Fabaceae) is a South and Central American tree of great ecological importance and one of the most common species in several sites of seasonally dry forests. Our goal was to develop microsatellite markers to assess the genetic diversity and struct...

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Autores principales: López-Roberts, M. Cristina, Barbosa, Ariane R., Paganucci de Queiroz, Luciano, van den Berg, Cássio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716775/
https://www.ncbi.nlm.nih.gov/pubmed/26819856
http://dx.doi.org/10.3732/apps.1500062
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author López-Roberts, M. Cristina
Barbosa, Ariane R.
Paganucci de Queiroz, Luciano
van den Berg, Cássio
author_facet López-Roberts, M. Cristina
Barbosa, Ariane R.
Paganucci de Queiroz, Luciano
van den Berg, Cássio
author_sort López-Roberts, M. Cristina
collection PubMed
description PREMISE OF THE STUDY: Senna spectabilis var. excelsa (Fabaceae) is a South and Central American tree of great ecological importance and one of the most common species in several sites of seasonally dry forests. Our goal was to develop microsatellite markers to assess the genetic diversity and structure of this species. METHODS AND RESULTS: We designed and assessed 53 loci obtained from a microsatellite-enriched library and an intersimple sequence repeat library. Fourteen loci were polymorphic, and they presented a total of 39 alleles in a sample of 61 individuals from six populations. The mean values of observed and expected heterozygosities were 0.355 and 0.479, respectively. Polymorphism information content was 0.390 and the Shannon index was 0.778. CONCLUSIONS: Polymorphism information content and Shannon index indicate that at least nine of the 14 microsatellite loci developed are moderate to highly informative, and potentially useful for population genetic studies in this species.
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spelling pubmed-47167752016-01-27 Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1) López-Roberts, M. Cristina Barbosa, Ariane R. Paganucci de Queiroz, Luciano van den Berg, Cássio Appl Plant Sci Primer Note PREMISE OF THE STUDY: Senna spectabilis var. excelsa (Fabaceae) is a South and Central American tree of great ecological importance and one of the most common species in several sites of seasonally dry forests. Our goal was to develop microsatellite markers to assess the genetic diversity and structure of this species. METHODS AND RESULTS: We designed and assessed 53 loci obtained from a microsatellite-enriched library and an intersimple sequence repeat library. Fourteen loci were polymorphic, and they presented a total of 39 alleles in a sample of 61 individuals from six populations. The mean values of observed and expected heterozygosities were 0.355 and 0.479, respectively. Polymorphism information content was 0.390 and the Shannon index was 0.778. CONCLUSIONS: Polymorphism information content and Shannon index indicate that at least nine of the 14 microsatellite loci developed are moderate to highly informative, and potentially useful for population genetic studies in this species. Botanical Society of America 2016-01-11 /pmc/articles/PMC4716775/ /pubmed/26819856 http://dx.doi.org/10.3732/apps.1500062 Text en © 2016 López-Roberts et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
López-Roberts, M. Cristina
Barbosa, Ariane R.
Paganucci de Queiroz, Luciano
van den Berg, Cássio
Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)
title Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)
title_full Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)
title_fullStr Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)
title_full_unstemmed Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)
title_short Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae)(1)
title_sort microsatellite markers for senna spectabilis var. excelsa (caesalpinioideae, fabaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716775/
https://www.ncbi.nlm.nih.gov/pubmed/26819856
http://dx.doi.org/10.3732/apps.1500062
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