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Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1)
PREMISE OF THE STUDY: We developed microsatellite primers for Lespedeza maritima (Fabaceae), a Korean endemic shrub, and conducted cross-amplifications for closely related species. METHODS AND RESULTS: We produced 28 polymorphic microsatellite markers through reference mapping of 300-bp paired-end r...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716779/ https://www.ncbi.nlm.nih.gov/pubmed/26819860 http://dx.doi.org/10.3732/apps.1500089 |
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author | Jin, Dong-Pil Cho, Won-Bum Choi, In-Su Choi, Byoung-Hee |
author_facet | Jin, Dong-Pil Cho, Won-Bum Choi, In-Su Choi, Byoung-Hee |
author_sort | Jin, Dong-Pil |
collection | PubMed |
description | PREMISE OF THE STUDY: We developed microsatellite primers for Lespedeza maritima (Fabaceae), a Korean endemic shrub, and conducted cross-amplifications for closely related species. METHODS AND RESULTS: We produced 28 polymorphic microsatellite markers through reference mapping of 300-bp paired-end reads obtained from Illumina MiSeq data. For 47 individual plants from two populations, the total alleles numbered two to 13, and observed and expected heterozygosities ranged from 0.067 to 0.867 and from 0.064 to 0.848, respectively. Most of these markers were well amplified in closely related species. CONCLUSIONS: In future research, the microsatellite markers described here will help reveal the taxonomic entity of this species. |
format | Online Article Text |
id | pubmed-4716779 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-47167792016-01-27 Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1) Jin, Dong-Pil Cho, Won-Bum Choi, In-Su Choi, Byoung-Hee Appl Plant Sci Primer Note PREMISE OF THE STUDY: We developed microsatellite primers for Lespedeza maritima (Fabaceae), a Korean endemic shrub, and conducted cross-amplifications for closely related species. METHODS AND RESULTS: We produced 28 polymorphic microsatellite markers through reference mapping of 300-bp paired-end reads obtained from Illumina MiSeq data. For 47 individual plants from two populations, the total alleles numbered two to 13, and observed and expected heterozygosities ranged from 0.067 to 0.867 and from 0.064 to 0.848, respectively. Most of these markers were well amplified in closely related species. CONCLUSIONS: In future research, the microsatellite markers described here will help reveal the taxonomic entity of this species. Botanical Society of America 2016-01-07 /pmc/articles/PMC4716779/ /pubmed/26819860 http://dx.doi.org/10.3732/apps.1500089 Text en © 2016 Jin et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Jin, Dong-Pil Cho, Won-Bum Choi, In-Su Choi, Byoung-Hee Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1) |
title | Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1) |
title_full | Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1) |
title_fullStr | Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1) |
title_full_unstemmed | Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1) |
title_short | Isolation and characterization of 28 microsatellite loci for a Korean endemic, Lespedeza maritima (Fabaceae)(1) |
title_sort | isolation and characterization of 28 microsatellite loci for a korean endemic, lespedeza maritima (fabaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716779/ https://www.ncbi.nlm.nih.gov/pubmed/26819860 http://dx.doi.org/10.3732/apps.1500089 |
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