Genome Update. Let the consumer beware: Streptomyces genome sequence quality

A genome sequence assembly represents a model of a genome. This article explores some tools and methods for assessing the quality of an assembly, using publicly available data for Streptomyces species as the example. There is great variability in quality of assemblies deposited in GenBank. Only in a...

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Detalles Bibliográficos
Autor principal: Studholme, David J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Genomics Update
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4720414/
https://www.ncbi.nlm.nih.gov/pubmed/26986204
http://dx.doi.org/10.1111/1751-7915.12344
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author Studholme, David J.
author_facet Studholme, David J.
author_sort Studholme, David J.
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description A genome sequence assembly represents a model of a genome. This article explores some tools and methods for assessing the quality of an assembly, using publicly available data for Streptomyces species as the example. There is great variability in quality of assemblies deposited in GenBank. Only in a small minority of these assemblies are the raw data available, enabling full appraisal of the assembly quality.
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spelling pubmed-47204142016-01-28 Genome Update. Let the consumer beware: Streptomyces genome sequence quality Studholme, David J. Microb Biotechnol Genomics Update A genome sequence assembly represents a model of a genome. This article explores some tools and methods for assessing the quality of an assembly, using publicly available data for Streptomyces species as the example. There is great variability in quality of assemblies deposited in GenBank. Only in a small minority of these assemblies are the raw data available, enabling full appraisal of the assembly quality. John Wiley and Sons Inc. 2016-01-06 /pmc/articles/PMC4720414/ /pubmed/26986204 http://dx.doi.org/10.1111/1751-7915.12344 Text en © 2015 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genomics Update
Studholme, David J.
Genome Update. Let the consumer beware: Streptomyces genome sequence quality
title Genome Update. Let the consumer beware: Streptomyces genome sequence quality
title_full Genome Update. Let the consumer beware: Streptomyces genome sequence quality
title_fullStr Genome Update. Let the consumer beware: Streptomyces genome sequence quality
title_full_unstemmed Genome Update. Let the consumer beware: Streptomyces genome sequence quality
title_short Genome Update. Let the consumer beware: Streptomyces genome sequence quality
title_sort genome update. let the consumer beware: streptomyces genome sequence quality
topic Genomics Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4720414/
https://www.ncbi.nlm.nih.gov/pubmed/26986204
http://dx.doi.org/10.1111/1751-7915.12344
work_keys_str_mv AT studholmedavidj genomeupdatelettheconsumerbewarestreptomycesgenomesequencequality

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