Cargando…

OryzaGenome: Genome Diversity Database of Wild Oryza Species

The species in the genus Oryza, encompassing nine genome types and 23 species, are a rich genetic resource and may have applications in deeper genomic analyses aiming to understand the evolution of plant genomes. With the advancement of next-generation sequencing (NGS) technology, a flood of Oryza s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ohyanagi, Hajime, Ebata, Toshinobu, Huang, Xuehui, Gong, Hao, Fujita, Masahiro, Mochizuki, Takako, Toyoda, Atsushi, Fujiyama, Asao, Kaminuma, Eli, Nakamura, Yasukazu, Feng, Qi, Wang, Zi-Xuan, Han, Bin, Kurata, Nori
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Special Online Collection – Database Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722174/ https://www.ncbi.nlm.nih.gov/pubmed/26578696 http://dx.doi.org/10.1093/pcp/pcv171

Ejemplares similares

OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species
por: Kajiya-Kanegae, Hiromi, et al.
Publicado: (2021)

Draft Genome Sequence of Lactobacillus oryzae Strain SG293(T)
por: Tanizawa, Yasuhiro, et al.
Publicado: (2014)

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species
por: Reuscher, Stefan, et al.
Publicado: (2018)

Draft Genome Sequence of Weissella oryzae SG25(T), Isolated from Fermented Rice Grains
por: Tanizawa, Yasuhiro, et al.
Publicado: (2014)

Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation
por: Kitazumi, Ai, et al.
Publicado: (2018)

Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels
por: Shenton, Matt, et al.
Publicado: (2020)

Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza
por: Yamaki, Shinichiro, et al.
Publicado: (2013)

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach
por: Shimizu, Tokurou, et al.
Publicado: (2017)

A web-based microsatellite database for the Magnaporthe oryzae genome
por: Singh, Pankaj Kumar, et al.
Publicado: (2016)

DNApod: DNA polymorphism annotation database from next-generation sequence read archives
por: Mochizuki, Takako, et al.
Publicado: (2017)

OryzaExpress: An Integrated Database of Gene Expression Networks and Omics Annotations in Rice
por: Hamada, Kazuki, et al.
Publicado: (2011)

Predicting the Interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service
por: Kim, Jeong-Gu, et al.
Publicado: (2008)

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes
por: Shimizu, Tokurou, et al.
Publicado: (2016)

Genomic Resources of Magnaporthe oryzae (GROMO): A comprehensive and integrated database on rice blast fungus
por: Thakur, Shalabh, et al.
Publicado: (2009)

DDBJ Read Annotation Pipeline: A Cloud Computing-Based Pipeline for High-Throughput Analysis of Next-Generation Sequencing Data
por: Nagasaki, Hideki, et al.
Publicado: (2013)

Plant Genome DataBase Japan (PGDBj): A Portal Website for the Integration of Plant Genome-Related Databases
por: Asamizu, Erika, et al.
Publicado: (2014)

PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species
por: Niihama, Mitsuru, et al.
Publicado: (2015)

Orchidstra: An Integrated Orchid Functional Genomics Database
por: Su, Chun-lin, et al.
Publicado: (2013)

The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses
por: Cooper, Laurel, et al.
Publicado: (2013)

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics
por: Sakai, Hiroaki, et al.
Publicado: (2013)

OryzaPG-DB: Rice Proteome Database based on Shotgun Proteogenomics
por: Helmy, Mohamed, et al.
Publicado: (2011)

TOMATOMICS: A Web Database for Integrated Omics Information in Tomato
por: Kudo, Toru, et al.
Publicado: (2017)

Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes
por: Horiuchi, Youko, et al.
Publicado: (2015)

PlantGM: a database for genetic markers in rice (Oryza sativa) and Chinese cabbage (Brassica rapa)
por: Kim, Chang Kug, et al.
Publicado: (2008)

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci
por: Kaminuma, Eli, et al.
Publicado: (2013)

Plant Omics Data Center: An Integrated Web Repository for Interspecies Gene Expression Networks with NLP-Based Curation
por: Ohyanagi, Hajime, et al.
Publicado: (2015)

MEGANTE: A Web-Based System for Integrated Plant Genome Annotation
por: Numa, Hisataka, et al.
Publicado: (2014)

GenomicusPlants: A Web Resource to Study Genome Evolution in Flowering Plants
por: Louis, Alexandra, et al.
Publicado: (2015)

KAIKObase: An integrated silkworm genome database and data mining tool
por: Shimomura, Michihiko, et al.
Publicado: (2009)

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
por: Chen, Jinfeng, et al.
Publicado: (2013)

Population genomic insights into variation and evolution of Xanthomonas oryzae pv. oryzae
por: Midha, Samriti, et al.
Publicado: (2017)

Complete Genome Sequences of 10 Xanthomonas oryzae pv. oryzae Bacteriophages
por: Kovács, Tamás, et al.
Publicado: (2019)

Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits
por: Minamikawa, Mai F., et al.
Publicado: (2017)

MOROKOSHI: Transcriptome Database in Sorghum bicolor
por: Makita, Yuko, et al.
Publicado: (2015)

PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation
por: Sakurai, Tetsuya, et al.
Publicado: (2013)

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice
por: Naika, Mahantesha, et al.
Publicado: (2013)

UniVIO: A Multiple Omics Database with Hormonome and Transcriptome Data from Rice
por: Kudo, Toru, et al.
Publicado: (2013)

DNA Data Bank of Japan: 30th anniversary
por: Kodama, Yuichi, et al.
Publicado: (2018)

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
por: Ohyanagi, Hajime, et al.
Publicado: (2006)

Complete Genome Sequence of the African Strain AXO1947 of Xanthomonas oryzae pv. oryzae
por: Huguet-Tapia, J. C., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_l4en1anse8v3fsvfthim1mulf8