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BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data

Data-driven neuroscience aims to find statistical relationships between brain activity and task behavior from large-scale datasets. To facilitate high-throughput data processing and modeling, we created BrainLiner as a web platform for sharing time-aligned, brain-behavior data. Using an HDF5-based d...

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Autores principales: Takemiya, Makoto, Majima, Kei, Tsukamoto, Mitsuaki, Kamitani, Yukiyasu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4726786/
https://www.ncbi.nlm.nih.gov/pubmed/26858636
http://dx.doi.org/10.3389/fninf.2016.00003
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author Takemiya, Makoto
Majima, Kei
Tsukamoto, Mitsuaki
Kamitani, Yukiyasu
author_facet Takemiya, Makoto
Majima, Kei
Tsukamoto, Mitsuaki
Kamitani, Yukiyasu
author_sort Takemiya, Makoto
collection PubMed
description Data-driven neuroscience aims to find statistical relationships between brain activity and task behavior from large-scale datasets. To facilitate high-throughput data processing and modeling, we created BrainLiner as a web platform for sharing time-aligned, brain-behavior data. Using an HDF5-based data format, BrainLiner treats brain activity and data related to behavior with the same salience, aligning both behavioral and brain activity data on a common time axis. This facilitates learning the relationship between behavior and brain activity. Using a common data file format also simplifies data processing and analyses. Properties describing data are unambiguously defined using a schema, allowing machine-readable definition of data. The BrainLiner platform allows users to upload and download data, as well as to explore and search for data from the web platform. A WebGL-based data explorer can visualize highly detailed neurophysiological data from within the web browser, and a data-driven search feature allows users to search for similar time windows of data. This increases transparency, and allows for visual inspection of neural coding. BrainLiner thus provides an essential set of tools for data sharing and data-driven modeling.
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spelling pubmed-47267862016-02-08 BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data Takemiya, Makoto Majima, Kei Tsukamoto, Mitsuaki Kamitani, Yukiyasu Front Neuroinform Neuroscience Data-driven neuroscience aims to find statistical relationships between brain activity and task behavior from large-scale datasets. To facilitate high-throughput data processing and modeling, we created BrainLiner as a web platform for sharing time-aligned, brain-behavior data. Using an HDF5-based data format, BrainLiner treats brain activity and data related to behavior with the same salience, aligning both behavioral and brain activity data on a common time axis. This facilitates learning the relationship between behavior and brain activity. Using a common data file format also simplifies data processing and analyses. Properties describing data are unambiguously defined using a schema, allowing machine-readable definition of data. The BrainLiner platform allows users to upload and download data, as well as to explore and search for data from the web platform. A WebGL-based data explorer can visualize highly detailed neurophysiological data from within the web browser, and a data-driven search feature allows users to search for similar time windows of data. This increases transparency, and allows for visual inspection of neural coding. BrainLiner thus provides an essential set of tools for data sharing and data-driven modeling. Frontiers Media S.A. 2016-01-26 /pmc/articles/PMC4726786/ /pubmed/26858636 http://dx.doi.org/10.3389/fninf.2016.00003 Text en Copyright © 2016 Takemiya, Majima, Tsukamoto and Kamitani. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Takemiya, Makoto
Majima, Kei
Tsukamoto, Mitsuaki
Kamitani, Yukiyasu
BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data
title BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data
title_full BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data
title_fullStr BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data
title_full_unstemmed BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data
title_short BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data
title_sort brainliner: a neuroinformatics platform for sharing time-aligned brain-behavior data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4726786/
https://www.ncbi.nlm.nih.gov/pubmed/26858636
http://dx.doi.org/10.3389/fninf.2016.00003
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