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Deciphering Parameter Sensitivity in the BvgAS Signal Transduction

To understand the switching of different phenotypic phases of Bordetella pertussis, we propose an optimized mathematical framework for signal transduction through BvgAS two-component system. The response of the network output to the sensory input has been demonstrated in steady state. An analysis in...

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Detalles Bibliográficos
Autores principales: Mapder, Tarunendu, Talukder, Srijeeta, Chattopadhyay, Sudip, Banik, Suman K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4727886/
https://www.ncbi.nlm.nih.gov/pubmed/26812153
http://dx.doi.org/10.1371/journal.pone.0147281
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author Mapder, Tarunendu
Talukder, Srijeeta
Chattopadhyay, Sudip
Banik, Suman K.
author_facet Mapder, Tarunendu
Talukder, Srijeeta
Chattopadhyay, Sudip
Banik, Suman K.
author_sort Mapder, Tarunendu
collection PubMed
description To understand the switching of different phenotypic phases of Bordetella pertussis, we propose an optimized mathematical framework for signal transduction through BvgAS two-component system. The response of the network output to the sensory input has been demonstrated in steady state. An analysis in terms of local sensitivity amplification characterizes the nature of the molecular switch. The sensitivity analysis of the model parameters within the framework of various correlation coefficients helps to decipher the contribution of the modular structure in signal propagation. Once classified, the model parameters are tuned to generate the behavior of some novel strains using simulated annealing, a stochastic optimization technique.
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spelling pubmed-47278862016-02-03 Deciphering Parameter Sensitivity in the BvgAS Signal Transduction Mapder, Tarunendu Talukder, Srijeeta Chattopadhyay, Sudip Banik, Suman K. PLoS One Research Article To understand the switching of different phenotypic phases of Bordetella pertussis, we propose an optimized mathematical framework for signal transduction through BvgAS two-component system. The response of the network output to the sensory input has been demonstrated in steady state. An analysis in terms of local sensitivity amplification characterizes the nature of the molecular switch. The sensitivity analysis of the model parameters within the framework of various correlation coefficients helps to decipher the contribution of the modular structure in signal propagation. Once classified, the model parameters are tuned to generate the behavior of some novel strains using simulated annealing, a stochastic optimization technique. Public Library of Science 2016-01-26 /pmc/articles/PMC4727886/ /pubmed/26812153 http://dx.doi.org/10.1371/journal.pone.0147281 Text en © 2016 Mapder et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Mapder, Tarunendu
Talukder, Srijeeta
Chattopadhyay, Sudip
Banik, Suman K.
Deciphering Parameter Sensitivity in the BvgAS Signal Transduction
title Deciphering Parameter Sensitivity in the BvgAS Signal Transduction
title_full Deciphering Parameter Sensitivity in the BvgAS Signal Transduction
title_fullStr Deciphering Parameter Sensitivity in the BvgAS Signal Transduction
title_full_unstemmed Deciphering Parameter Sensitivity in the BvgAS Signal Transduction
title_short Deciphering Parameter Sensitivity in the BvgAS Signal Transduction
title_sort deciphering parameter sensitivity in the bvgas signal transduction
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4727886/
https://www.ncbi.nlm.nih.gov/pubmed/26812153
http://dx.doi.org/10.1371/journal.pone.0147281
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