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Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping

Single-molecule techniques are being developed with the exciting prospect of revolutionizing the healthcare industry by generating vast amounts of genetic and proteomic data. One exceptionally promising route is in the use of nanopore sensors. However, a well-known complexity is that detection and c...

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Autores principales: Freedman, Kevin J., Otto, Lauren M., Ivanov, Aleksandar P., Barik, Avijit, Oh, Sang-Hyun, Edel, Joshua B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729827/
https://www.ncbi.nlm.nih.gov/pubmed/26732171
http://dx.doi.org/10.1038/ncomms10217
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author Freedman, Kevin J.
Otto, Lauren M.
Ivanov, Aleksandar P.
Barik, Avijit
Oh, Sang-Hyun
Edel, Joshua B.
author_facet Freedman, Kevin J.
Otto, Lauren M.
Ivanov, Aleksandar P.
Barik, Avijit
Oh, Sang-Hyun
Edel, Joshua B.
author_sort Freedman, Kevin J.
collection PubMed
description Single-molecule techniques are being developed with the exciting prospect of revolutionizing the healthcare industry by generating vast amounts of genetic and proteomic data. One exceptionally promising route is in the use of nanopore sensors. However, a well-known complexity is that detection and capture is predominantly diffusion limited. This problem is compounded when taking into account the capture volume of a nanopore, typically 10(8)–10(10) times smaller than the sample volume. To rectify this disproportionate ratio, we demonstrate a simple, yet powerful, method based on coupling single-molecule dielectrophoretic trapping to nanopore sensing. We show that DNA can be captured from a controllable, but typically much larger, volume and concentrated at the tip of a metallic nanopore. This enables the detection of single molecules at concentrations as low as 5 fM, which is approximately a 10(3) reduction in the limit of detection compared with existing methods, while still maintaining efficient throughput.
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spelling pubmed-47298272016-03-04 Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping Freedman, Kevin J. Otto, Lauren M. Ivanov, Aleksandar P. Barik, Avijit Oh, Sang-Hyun Edel, Joshua B. Nat Commun Article Single-molecule techniques are being developed with the exciting prospect of revolutionizing the healthcare industry by generating vast amounts of genetic and proteomic data. One exceptionally promising route is in the use of nanopore sensors. However, a well-known complexity is that detection and capture is predominantly diffusion limited. This problem is compounded when taking into account the capture volume of a nanopore, typically 10(8)–10(10) times smaller than the sample volume. To rectify this disproportionate ratio, we demonstrate a simple, yet powerful, method based on coupling single-molecule dielectrophoretic trapping to nanopore sensing. We show that DNA can be captured from a controllable, but typically much larger, volume and concentrated at the tip of a metallic nanopore. This enables the detection of single molecules at concentrations as low as 5 fM, which is approximately a 10(3) reduction in the limit of detection compared with existing methods, while still maintaining efficient throughput. Nature Publishing Group 2016-01-06 /pmc/articles/PMC4729827/ /pubmed/26732171 http://dx.doi.org/10.1038/ncomms10217 Text en Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Freedman, Kevin J.
Otto, Lauren M.
Ivanov, Aleksandar P.
Barik, Avijit
Oh, Sang-Hyun
Edel, Joshua B.
Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping
title Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping
title_full Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping
title_fullStr Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping
title_full_unstemmed Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping
title_short Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping
title_sort nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729827/
https://www.ncbi.nlm.nih.gov/pubmed/26732171
http://dx.doi.org/10.1038/ncomms10217
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