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A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data
Independent Component analysis (ICA) is a widely used technique for separating signals that have been mixed together. In this manuscript, we propose a novel ICA algorithm using density estimation and maximum likelihood, where the densities of the signals are estimated via p-spline based histogram sm...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4731731/ https://www.ncbi.nlm.nih.gov/pubmed/26858592 http://dx.doi.org/10.3389/fnins.2016.00015 |
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author | Li, Shanshan Chen, Shaojie Yue, Chen Caffo, Brian |
author_facet | Li, Shanshan Chen, Shaojie Yue, Chen Caffo, Brian |
author_sort | Li, Shanshan |
collection | PubMed |
description | Independent Component analysis (ICA) is a widely used technique for separating signals that have been mixed together. In this manuscript, we propose a novel ICA algorithm using density estimation and maximum likelihood, where the densities of the signals are estimated via p-spline based histogram smoothing and the mixing matrix is simultaneously estimated using an optimization algorithm. The algorithm is exceedingly simple, easy to implement and blind to the underlying distributions of the source signals. To relax the identically distributed assumption in the density function, a modified algorithm is proposed to allow for different density functions on different regions. The performance of the proposed algorithm is evaluated in different simulation settings. For illustration, the algorithm is applied to a research investigation with a large collection of resting state fMRI datasets. The results show that the algorithm successfully recovers the established brain networks. |
format | Online Article Text |
id | pubmed-4731731 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-47317312016-02-08 A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data Li, Shanshan Chen, Shaojie Yue, Chen Caffo, Brian Front Neurosci Neuroscience Independent Component analysis (ICA) is a widely used technique for separating signals that have been mixed together. In this manuscript, we propose a novel ICA algorithm using density estimation and maximum likelihood, where the densities of the signals are estimated via p-spline based histogram smoothing and the mixing matrix is simultaneously estimated using an optimization algorithm. The algorithm is exceedingly simple, easy to implement and blind to the underlying distributions of the source signals. To relax the identically distributed assumption in the density function, a modified algorithm is proposed to allow for different density functions on different regions. The performance of the proposed algorithm is evaluated in different simulation settings. For illustration, the algorithm is applied to a research investigation with a large collection of resting state fMRI datasets. The results show that the algorithm successfully recovers the established brain networks. Frontiers Media S.A. 2016-01-29 /pmc/articles/PMC4731731/ /pubmed/26858592 http://dx.doi.org/10.3389/fnins.2016.00015 Text en Copyright © 2016 Li, Chen, Yue and Caffo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Li, Shanshan Chen, Shaojie Yue, Chen Caffo, Brian A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data |
title | A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data |
title_full | A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data |
title_fullStr | A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data |
title_full_unstemmed | A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data |
title_short | A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data |
title_sort | parcellation based nonparametric algorithm for independent component analysis with application to fmri data |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4731731/ https://www.ncbi.nlm.nih.gov/pubmed/26858592 http://dx.doi.org/10.3389/fnins.2016.00015 |
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