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A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model

It is important not only to collect epidemiologic data on HIV but to also fully utilize such information to understand the epidemic over time and to help inform and monitor the impact of policies and interventions. We describe and apply a novel method to estimate the size and characteristics of HIV-...

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Autores principales: Nakagawa, Fumiyo, van Sighem, Ard, Thiebaut, Rodolphe, Smith, Colette, Ratmann, Oliver, Cambiano, Valentina, Albert, Jan, Amato-Gauci, Andrew, Bezemer, Daniela, Campbell, Colin, Commenges, Daniel, Donoghoe, Martin, Ford, Deborah, Kouyos, Roger, Lodwick, Rebecca, Lundgren, Jens, Pantazis, Nikos, Pharris, Anastasia, Quinten, Chantal, Thorne, Claire, Touloumi, Giota, Delpech, Valerie, Phillips, Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2016
Materias:
HIV
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733816/
https://www.ncbi.nlm.nih.gov/pubmed/26605814
http://dx.doi.org/10.1097/EDE.0000000000000423
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author Nakagawa, Fumiyo
van Sighem, Ard
Thiebaut, Rodolphe
Smith, Colette
Ratmann, Oliver
Cambiano, Valentina
Albert, Jan
Amato-Gauci, Andrew
Bezemer, Daniela
Campbell, Colin
Commenges, Daniel
Donoghoe, Martin
Ford, Deborah
Kouyos, Roger
Lodwick, Rebecca
Lundgren, Jens
Pantazis, Nikos
Pharris, Anastasia
Quinten, Chantal
Thorne, Claire
Touloumi, Giota
Delpech, Valerie
Phillips, Andrew
author_facet Nakagawa, Fumiyo
van Sighem, Ard
Thiebaut, Rodolphe
Smith, Colette
Ratmann, Oliver
Cambiano, Valentina
Albert, Jan
Amato-Gauci, Andrew
Bezemer, Daniela
Campbell, Colin
Commenges, Daniel
Donoghoe, Martin
Ford, Deborah
Kouyos, Roger
Lodwick, Rebecca
Lundgren, Jens
Pantazis, Nikos
Pharris, Anastasia
Quinten, Chantal
Thorne, Claire
Touloumi, Giota
Delpech, Valerie
Phillips, Andrew
author_sort Nakagawa, Fumiyo
collection PubMed
description It is important not only to collect epidemiologic data on HIV but to also fully utilize such information to understand the epidemic over time and to help inform and monitor the impact of policies and interventions. We describe and apply a novel method to estimate the size and characteristics of HIV-positive populations. The method was applied to data on men who have sex with men living in the UK and to a pseudo dataset to assess performance for different data availability. The individual-based simulation model was calibrated using an approximate Bayesian computation-based approach. In 2013, 48,310 (90% plausibility range: 39,900–45,560) men who have sex with men were estimated to be living with HIV in the UK, of whom 10,400 (6,160–17,350) were undiagnosed. There were an estimated 3,210 (1,730–5,350) infections per year on average between 2010 and 2013. Sixty-two percent of the total HIV-positive population are thought to have viral load <500 copies/ml. In the pseudo-epidemic example, HIV estimates have narrower plausibility ranges and are closer to the true number, the greater the data availability to calibrate the model. We demonstrate that our method can be applied to settings with less data, however plausibility ranges for estimates will be wider to reflect greater uncertainty of the data used to fit the model.
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spelling pubmed-47338162016-02-10 A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model Nakagawa, Fumiyo van Sighem, Ard Thiebaut, Rodolphe Smith, Colette Ratmann, Oliver Cambiano, Valentina Albert, Jan Amato-Gauci, Andrew Bezemer, Daniela Campbell, Colin Commenges, Daniel Donoghoe, Martin Ford, Deborah Kouyos, Roger Lodwick, Rebecca Lundgren, Jens Pantazis, Nikos Pharris, Anastasia Quinten, Chantal Thorne, Claire Touloumi, Giota Delpech, Valerie Phillips, Andrew Epidemiology HIV It is important not only to collect epidemiologic data on HIV but to also fully utilize such information to understand the epidemic over time and to help inform and monitor the impact of policies and interventions. We describe and apply a novel method to estimate the size and characteristics of HIV-positive populations. The method was applied to data on men who have sex with men living in the UK and to a pseudo dataset to assess performance for different data availability. The individual-based simulation model was calibrated using an approximate Bayesian computation-based approach. In 2013, 48,310 (90% plausibility range: 39,900–45,560) men who have sex with men were estimated to be living with HIV in the UK, of whom 10,400 (6,160–17,350) were undiagnosed. There were an estimated 3,210 (1,730–5,350) infections per year on average between 2010 and 2013. Sixty-two percent of the total HIV-positive population are thought to have viral load <500 copies/ml. In the pseudo-epidemic example, HIV estimates have narrower plausibility ranges and are closer to the true number, the greater the data availability to calibrate the model. We demonstrate that our method can be applied to settings with less data, however plausibility ranges for estimates will be wider to reflect greater uncertainty of the data used to fit the model. Lippincott Williams & Wilkins 2016-03 2016-02-02 /pmc/articles/PMC4733816/ /pubmed/26605814 http://dx.doi.org/10.1097/EDE.0000000000000423 Text en Copyright © 2015 Wolters Kluwer Health, Inc. All rights reserved. This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (http://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially.
spellingShingle HIV
Nakagawa, Fumiyo
van Sighem, Ard
Thiebaut, Rodolphe
Smith, Colette
Ratmann, Oliver
Cambiano, Valentina
Albert, Jan
Amato-Gauci, Andrew
Bezemer, Daniela
Campbell, Colin
Commenges, Daniel
Donoghoe, Martin
Ford, Deborah
Kouyos, Roger
Lodwick, Rebecca
Lundgren, Jens
Pantazis, Nikos
Pharris, Anastasia
Quinten, Chantal
Thorne, Claire
Touloumi, Giota
Delpech, Valerie
Phillips, Andrew
A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model
title A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model
title_full A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model
title_fullStr A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model
title_full_unstemmed A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model
title_short A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model
title_sort method to estimate the size and characteristics of hiv-positive populations using an individual-based stochastic simulation model
topic HIV
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733816/
https://www.ncbi.nlm.nih.gov/pubmed/26605814
http://dx.doi.org/10.1097/EDE.0000000000000423
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