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Improved community detection in weighted bipartite networks
Real-world complex networks are composed of non-random quantitative interactions. Identifying communities of nodes that tend to interact more with each other than the network as a whole is a key research focus across multiple disciplines, yet many community detection algorithms only use information...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736915/ https://www.ncbi.nlm.nih.gov/pubmed/26909160 http://dx.doi.org/10.1098/rsos.140536 |
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author | Beckett, Stephen J. |
author_facet | Beckett, Stephen J. |
author_sort | Beckett, Stephen J. |
collection | PubMed |
description | Real-world complex networks are composed of non-random quantitative interactions. Identifying communities of nodes that tend to interact more with each other than the network as a whole is a key research focus across multiple disciplines, yet many community detection algorithms only use information about the presence or absence of interactions between nodes. Weighted modularity is a potential method for evaluating the quality of community partitions in quantitative networks. In this framework, the optimal community partition of a network can be found by searching for the partition that maximizes modularity. Attempting to find the partition that maximizes modularity is a computationally hard problem requiring the use of algorithms. QuanBiMo is an algorithm that has been proposed to maximize weighted modularity in bipartite networks. This paper introduces two new algorithms, LPAwb+ and DIRTLPAwb+, for maximizing weighted modularity in bipartite networks. LPAwb+ and DIRTLPAwb+ robustly identify partitions with high modularity scores. DIRTLPAwb+ consistently matched or outperformed QuanBiMo, while the speed of LPAwb+ makes it an attractive choice for detecting the modularity of larger networks. Searching for modules using weighted data (rather than binary data) provides a different and potentially insightful method for evaluating network partitions. |
format | Online Article Text |
id | pubmed-4736915 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-47369152016-02-23 Improved community detection in weighted bipartite networks Beckett, Stephen J. R Soc Open Sci Biology (Whole Organism) Real-world complex networks are composed of non-random quantitative interactions. Identifying communities of nodes that tend to interact more with each other than the network as a whole is a key research focus across multiple disciplines, yet many community detection algorithms only use information about the presence or absence of interactions between nodes. Weighted modularity is a potential method for evaluating the quality of community partitions in quantitative networks. In this framework, the optimal community partition of a network can be found by searching for the partition that maximizes modularity. Attempting to find the partition that maximizes modularity is a computationally hard problem requiring the use of algorithms. QuanBiMo is an algorithm that has been proposed to maximize weighted modularity in bipartite networks. This paper introduces two new algorithms, LPAwb+ and DIRTLPAwb+, for maximizing weighted modularity in bipartite networks. LPAwb+ and DIRTLPAwb+ robustly identify partitions with high modularity scores. DIRTLPAwb+ consistently matched or outperformed QuanBiMo, while the speed of LPAwb+ makes it an attractive choice for detecting the modularity of larger networks. Searching for modules using weighted data (rather than binary data) provides a different and potentially insightful method for evaluating network partitions. The Royal Society Publishing 2016-01-20 /pmc/articles/PMC4736915/ /pubmed/26909160 http://dx.doi.org/10.1098/rsos.140536 Text en http://creativecommons.org/licenses/by/4.0/ © 2016 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Biology (Whole Organism) Beckett, Stephen J. Improved community detection in weighted bipartite networks |
title | Improved community detection in weighted bipartite networks |
title_full | Improved community detection in weighted bipartite networks |
title_fullStr | Improved community detection in weighted bipartite networks |
title_full_unstemmed | Improved community detection in weighted bipartite networks |
title_short | Improved community detection in weighted bipartite networks |
title_sort | improved community detection in weighted bipartite networks |
topic | Biology (Whole Organism) |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736915/ https://www.ncbi.nlm.nih.gov/pubmed/26909160 http://dx.doi.org/10.1098/rsos.140536 |
work_keys_str_mv | AT beckettstephenj improvedcommunitydetectioninweightedbipartitenetworks |