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Improved community detection in weighted bipartite networks

Real-world complex networks are composed of non-random quantitative interactions. Identifying communities of nodes that tend to interact more with each other than the network as a whole is a key research focus across multiple disciplines, yet many community detection algorithms only use information...

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Detalles Bibliográficos
Autor principal: Beckett, Stephen J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736915/
https://www.ncbi.nlm.nih.gov/pubmed/26909160
http://dx.doi.org/10.1098/rsos.140536
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author Beckett, Stephen J.
author_facet Beckett, Stephen J.
author_sort Beckett, Stephen J.
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description Real-world complex networks are composed of non-random quantitative interactions. Identifying communities of nodes that tend to interact more with each other than the network as a whole is a key research focus across multiple disciplines, yet many community detection algorithms only use information about the presence or absence of interactions between nodes. Weighted modularity is a potential method for evaluating the quality of community partitions in quantitative networks. In this framework, the optimal community partition of a network can be found by searching for the partition that maximizes modularity. Attempting to find the partition that maximizes modularity is a computationally hard problem requiring the use of algorithms. QuanBiMo is an algorithm that has been proposed to maximize weighted modularity in bipartite networks. This paper introduces two new algorithms, LPAwb+ and DIRTLPAwb+, for maximizing weighted modularity in bipartite networks. LPAwb+ and DIRTLPAwb+ robustly identify partitions with high modularity scores. DIRTLPAwb+ consistently matched or outperformed QuanBiMo, while the speed of LPAwb+ makes it an attractive choice for detecting the modularity of larger networks. Searching for modules using weighted data (rather than binary data) provides a different and potentially insightful method for evaluating network partitions.
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spelling pubmed-47369152016-02-23 Improved community detection in weighted bipartite networks Beckett, Stephen J. R Soc Open Sci Biology (Whole Organism) Real-world complex networks are composed of non-random quantitative interactions. Identifying communities of nodes that tend to interact more with each other than the network as a whole is a key research focus across multiple disciplines, yet many community detection algorithms only use information about the presence or absence of interactions between nodes. Weighted modularity is a potential method for evaluating the quality of community partitions in quantitative networks. In this framework, the optimal community partition of a network can be found by searching for the partition that maximizes modularity. Attempting to find the partition that maximizes modularity is a computationally hard problem requiring the use of algorithms. QuanBiMo is an algorithm that has been proposed to maximize weighted modularity in bipartite networks. This paper introduces two new algorithms, LPAwb+ and DIRTLPAwb+, for maximizing weighted modularity in bipartite networks. LPAwb+ and DIRTLPAwb+ robustly identify partitions with high modularity scores. DIRTLPAwb+ consistently matched or outperformed QuanBiMo, while the speed of LPAwb+ makes it an attractive choice for detecting the modularity of larger networks. Searching for modules using weighted data (rather than binary data) provides a different and potentially insightful method for evaluating network partitions. The Royal Society Publishing 2016-01-20 /pmc/articles/PMC4736915/ /pubmed/26909160 http://dx.doi.org/10.1098/rsos.140536 Text en http://creativecommons.org/licenses/by/4.0/ © 2016 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Biology (Whole Organism)
Beckett, Stephen J.
Improved community detection in weighted bipartite networks
title Improved community detection in weighted bipartite networks
title_full Improved community detection in weighted bipartite networks
title_fullStr Improved community detection in weighted bipartite networks
title_full_unstemmed Improved community detection in weighted bipartite networks
title_short Improved community detection in weighted bipartite networks
title_sort improved community detection in weighted bipartite networks
topic Biology (Whole Organism)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736915/
https://www.ncbi.nlm.nih.gov/pubmed/26909160
http://dx.doi.org/10.1098/rsos.140536
work_keys_str_mv AT beckettstephenj improvedcommunitydetectioninweightedbipartitenetworks