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NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data
The National Agricultural Biotechnology Information Center developed an access portal to search, visualize, and share agricultural genomics data with a focus on South Korean information and resources. The portal features an agricultural biotechnology database containing a wide range of omics data fr...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Libertas Academica
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737523/ https://www.ncbi.nlm.nih.gov/pubmed/26848255 http://dx.doi.org/10.4137/EBO.S34493 |
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author | Seol, Young-Joo Lee, Tae-Ho Park, Dong-Suk Kim, Chang-Kug |
author_facet | Seol, Young-Joo Lee, Tae-Ho Park, Dong-Suk Kim, Chang-Kug |
author_sort | Seol, Young-Joo |
collection | PubMed |
description | The National Agricultural Biotechnology Information Center developed an access portal to search, visualize, and share agricultural genomics data with a focus on South Korean information and resources. The portal features an agricultural biotechnology database containing a wide range of omics data from public and proprietary sources. We collected 28.4 TB of data from 162 agricultural organisms, with 10 types of omics data comprising next-generation sequencing sequence read archive, genome, gene, nucleotide, DNA chip, expressed sequence tag, interactome, protein structure, molecular marker, and single-nucleotide polymorphism datasets. Our genomic resources contain information on five animals, seven plants, and one fungus, which is accessed through a genome browser. We also developed a data submission and analysis system as a web service, with easy-to-use functions and cutting-edge algorithms, including those for handling next-generation sequencing data. |
format | Online Article Text |
id | pubmed-4737523 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Libertas Academica |
record_format | MEDLINE/PubMed |
spelling | pubmed-47375232016-02-04 NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data Seol, Young-Joo Lee, Tae-Ho Park, Dong-Suk Kim, Chang-Kug Evol Bioinform Online Original Research The National Agricultural Biotechnology Information Center developed an access portal to search, visualize, and share agricultural genomics data with a focus on South Korean information and resources. The portal features an agricultural biotechnology database containing a wide range of omics data from public and proprietary sources. We collected 28.4 TB of data from 162 agricultural organisms, with 10 types of omics data comprising next-generation sequencing sequence read archive, genome, gene, nucleotide, DNA chip, expressed sequence tag, interactome, protein structure, molecular marker, and single-nucleotide polymorphism datasets. Our genomic resources contain information on five animals, seven plants, and one fungus, which is accessed through a genome browser. We also developed a data submission and analysis system as a web service, with easy-to-use functions and cutting-edge algorithms, including those for handling next-generation sequencing data. Libertas Academica 2016-02-01 /pmc/articles/PMC4737523/ /pubmed/26848255 http://dx.doi.org/10.4137/EBO.S34493 Text en © 2016 the author(s), publisher and licensee Libertas Academica Ltd. This is an open-access article distributed under the terms of the Creative Commons CC-BY-NC 3.0 License. |
spellingShingle | Original Research Seol, Young-Joo Lee, Tae-Ho Park, Dong-Suk Kim, Chang-Kug NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data |
title | NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data |
title_full | NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data |
title_fullStr | NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data |
title_full_unstemmed | NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data |
title_short | NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data |
title_sort | nabic: a new access portal to search, visualize, and share agricultural genomics data |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737523/ https://www.ncbi.nlm.nih.gov/pubmed/26848255 http://dx.doi.org/10.4137/EBO.S34493 |
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