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Identifying HIV-induced subgraph patterns in brain networks with side information

Investigating brain connectivity networks for neurological disorder identification has attracted great interest in recent years, most of which focus on the graph representation alone. However, in addition to brain networks derived from the neuroimaging data, hundreds of clinical, immunologic, serolo...

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Autores principales: Cao, Bokai, Kong, Xiangnan, Zhang, Jingyuan, Yu, Philip S., Ragin, Ann B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737668/
https://www.ncbi.nlm.nih.gov/pubmed/27747563
http://dx.doi.org/10.1007/s40708-015-0023-1
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author Cao, Bokai
Kong, Xiangnan
Zhang, Jingyuan
Yu, Philip S.
Ragin, Ann B.
author_facet Cao, Bokai
Kong, Xiangnan
Zhang, Jingyuan
Yu, Philip S.
Ragin, Ann B.
author_sort Cao, Bokai
collection PubMed
description Investigating brain connectivity networks for neurological disorder identification has attracted great interest in recent years, most of which focus on the graph representation alone. However, in addition to brain networks derived from the neuroimaging data, hundreds of clinical, immunologic, serologic, and cognitive measures may also be documented for each subject. These measures compose multiple side views encoding a tremendous amount of supplemental information for diagnostic purposes, yet are often ignored. In this paper, we study the problem of subgraph selection from brain networks with side information guidance and propose a novel solution to find an optimal set of subgraph patterns for graph classification by exploring a plurality of side views. We derive a feature evaluation criterion, named gSide, to estimate the usefulness of subgraph patterns based upon side views. Then we develop a branch-and-bound algorithm, called gMSV, to efficiently search for optimal subgraph patterns by integrating the subgraph mining process and the procedure of discriminative feature selection. Empirical studies on graph classification tasks for neurological disorders using brain networks demonstrate that subgraph patterns selected by the multi-side-view-guided subgraph selection approach can effectively boost graph classification performances and are relevant to disease diagnosis.
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spelling pubmed-47376682016-02-09 Identifying HIV-induced subgraph patterns in brain networks with side information Cao, Bokai Kong, Xiangnan Zhang, Jingyuan Yu, Philip S. Ragin, Ann B. Brain Inform Article Investigating brain connectivity networks for neurological disorder identification has attracted great interest in recent years, most of which focus on the graph representation alone. However, in addition to brain networks derived from the neuroimaging data, hundreds of clinical, immunologic, serologic, and cognitive measures may also be documented for each subject. These measures compose multiple side views encoding a tremendous amount of supplemental information for diagnostic purposes, yet are often ignored. In this paper, we study the problem of subgraph selection from brain networks with side information guidance and propose a novel solution to find an optimal set of subgraph patterns for graph classification by exploring a plurality of side views. We derive a feature evaluation criterion, named gSide, to estimate the usefulness of subgraph patterns based upon side views. Then we develop a branch-and-bound algorithm, called gMSV, to efficiently search for optimal subgraph patterns by integrating the subgraph mining process and the procedure of discriminative feature selection. Empirical studies on graph classification tasks for neurological disorders using brain networks demonstrate that subgraph patterns selected by the multi-side-view-guided subgraph selection approach can effectively boost graph classification performances and are relevant to disease diagnosis. Springer Berlin Heidelberg 2015-11-16 /pmc/articles/PMC4737668/ /pubmed/27747563 http://dx.doi.org/10.1007/s40708-015-0023-1 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Cao, Bokai
Kong, Xiangnan
Zhang, Jingyuan
Yu, Philip S.
Ragin, Ann B.
Identifying HIV-induced subgraph patterns in brain networks with side information
title Identifying HIV-induced subgraph patterns in brain networks with side information
title_full Identifying HIV-induced subgraph patterns in brain networks with side information
title_fullStr Identifying HIV-induced subgraph patterns in brain networks with side information
title_full_unstemmed Identifying HIV-induced subgraph patterns in brain networks with side information
title_short Identifying HIV-induced subgraph patterns in brain networks with side information
title_sort identifying hiv-induced subgraph patterns in brain networks with side information
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737668/
https://www.ncbi.nlm.nih.gov/pubmed/27747563
http://dx.doi.org/10.1007/s40708-015-0023-1
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