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Identifying HIV-induced subgraph patterns in brain networks with side information
Investigating brain connectivity networks for neurological disorder identification has attracted great interest in recent years, most of which focus on the graph representation alone. However, in addition to brain networks derived from the neuroimaging data, hundreds of clinical, immunologic, serolo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737668/ https://www.ncbi.nlm.nih.gov/pubmed/27747563 http://dx.doi.org/10.1007/s40708-015-0023-1 |
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author | Cao, Bokai Kong, Xiangnan Zhang, Jingyuan Yu, Philip S. Ragin, Ann B. |
author_facet | Cao, Bokai Kong, Xiangnan Zhang, Jingyuan Yu, Philip S. Ragin, Ann B. |
author_sort | Cao, Bokai |
collection | PubMed |
description | Investigating brain connectivity networks for neurological disorder identification has attracted great interest in recent years, most of which focus on the graph representation alone. However, in addition to brain networks derived from the neuroimaging data, hundreds of clinical, immunologic, serologic, and cognitive measures may also be documented for each subject. These measures compose multiple side views encoding a tremendous amount of supplemental information for diagnostic purposes, yet are often ignored. In this paper, we study the problem of subgraph selection from brain networks with side information guidance and propose a novel solution to find an optimal set of subgraph patterns for graph classification by exploring a plurality of side views. We derive a feature evaluation criterion, named gSide, to estimate the usefulness of subgraph patterns based upon side views. Then we develop a branch-and-bound algorithm, called gMSV, to efficiently search for optimal subgraph patterns by integrating the subgraph mining process and the procedure of discriminative feature selection. Empirical studies on graph classification tasks for neurological disorders using brain networks demonstrate that subgraph patterns selected by the multi-side-view-guided subgraph selection approach can effectively boost graph classification performances and are relevant to disease diagnosis. |
format | Online Article Text |
id | pubmed-4737668 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-47376682016-02-09 Identifying HIV-induced subgraph patterns in brain networks with side information Cao, Bokai Kong, Xiangnan Zhang, Jingyuan Yu, Philip S. Ragin, Ann B. Brain Inform Article Investigating brain connectivity networks for neurological disorder identification has attracted great interest in recent years, most of which focus on the graph representation alone. However, in addition to brain networks derived from the neuroimaging data, hundreds of clinical, immunologic, serologic, and cognitive measures may also be documented for each subject. These measures compose multiple side views encoding a tremendous amount of supplemental information for diagnostic purposes, yet are often ignored. In this paper, we study the problem of subgraph selection from brain networks with side information guidance and propose a novel solution to find an optimal set of subgraph patterns for graph classification by exploring a plurality of side views. We derive a feature evaluation criterion, named gSide, to estimate the usefulness of subgraph patterns based upon side views. Then we develop a branch-and-bound algorithm, called gMSV, to efficiently search for optimal subgraph patterns by integrating the subgraph mining process and the procedure of discriminative feature selection. Empirical studies on graph classification tasks for neurological disorders using brain networks demonstrate that subgraph patterns selected by the multi-side-view-guided subgraph selection approach can effectively boost graph classification performances and are relevant to disease diagnosis. Springer Berlin Heidelberg 2015-11-16 /pmc/articles/PMC4737668/ /pubmed/27747563 http://dx.doi.org/10.1007/s40708-015-0023-1 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Cao, Bokai Kong, Xiangnan Zhang, Jingyuan Yu, Philip S. Ragin, Ann B. Identifying HIV-induced subgraph patterns in brain networks with side information |
title | Identifying HIV-induced subgraph patterns in brain networks with side information |
title_full | Identifying HIV-induced subgraph patterns in brain networks with side information |
title_fullStr | Identifying HIV-induced subgraph patterns in brain networks with side information |
title_full_unstemmed | Identifying HIV-induced subgraph patterns in brain networks with side information |
title_short | Identifying HIV-induced subgraph patterns in brain networks with side information |
title_sort | identifying hiv-induced subgraph patterns in brain networks with side information |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737668/ https://www.ncbi.nlm.nih.gov/pubmed/27747563 http://dx.doi.org/10.1007/s40708-015-0023-1 |
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