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Exploring the potential of public proteomics data
In a global effort for scientific transparency, it has become feasible and good practice to share experimental data supporting novel findings. Consequently, the amount of publicly available MS‐based proteomics data has grown substantially in recent years. With some notable exceptions, this extensive...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4738454/ https://www.ncbi.nlm.nih.gov/pubmed/26449181 http://dx.doi.org/10.1002/pmic.201500295 |
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author | Vaudel, Marc Verheggen, Kenneth Csordas, Attila Ræder, Helge Berven, Frode S. Martens, Lennart Vizcaíno, Juan A. Barsnes, Harald |
author_facet | Vaudel, Marc Verheggen, Kenneth Csordas, Attila Ræder, Helge Berven, Frode S. Martens, Lennart Vizcaíno, Juan A. Barsnes, Harald |
author_sort | Vaudel, Marc |
collection | PubMed |
description | In a global effort for scientific transparency, it has become feasible and good practice to share experimental data supporting novel findings. Consequently, the amount of publicly available MS‐based proteomics data has grown substantially in recent years. With some notable exceptions, this extensive material has however largely been left untouched. The time has now come for the proteomics community to utilize this potential gold mine for new discoveries, and uncover its untapped potential. In this review, we provide a brief history of the sharing of proteomics data, showing ways in which publicly available proteomics data are already being (re‐)used, and outline potential future opportunities based on four different usage types: use, reuse, reprocess, and repurpose. We thus aim to assist the proteomics community in stepping up to the challenge, and to make the most of the rapidly increasing amount of public proteomics data. |
format | Online Article Text |
id | pubmed-4738454 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-47384542016-02-12 Exploring the potential of public proteomics data Vaudel, Marc Verheggen, Kenneth Csordas, Attila Ræder, Helge Berven, Frode S. Martens, Lennart Vizcaíno, Juan A. Barsnes, Harald Proteomics Bioinformatics In a global effort for scientific transparency, it has become feasible and good practice to share experimental data supporting novel findings. Consequently, the amount of publicly available MS‐based proteomics data has grown substantially in recent years. With some notable exceptions, this extensive material has however largely been left untouched. The time has now come for the proteomics community to utilize this potential gold mine for new discoveries, and uncover its untapped potential. In this review, we provide a brief history of the sharing of proteomics data, showing ways in which publicly available proteomics data are already being (re‐)used, and outline potential future opportunities based on four different usage types: use, reuse, reprocess, and repurpose. We thus aim to assist the proteomics community in stepping up to the challenge, and to make the most of the rapidly increasing amount of public proteomics data. John Wiley and Sons Inc. 2015-12-15 2016-01 /pmc/articles/PMC4738454/ /pubmed/26449181 http://dx.doi.org/10.1002/pmic.201500295 Text en © 2015 The Authors. Proteomics published by Wiley‐VCH Verlag GmbH & Co. KGaA, Weinheim. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Bioinformatics Vaudel, Marc Verheggen, Kenneth Csordas, Attila Ræder, Helge Berven, Frode S. Martens, Lennart Vizcaíno, Juan A. Barsnes, Harald Exploring the potential of public proteomics data |
title | Exploring the potential of public proteomics data |
title_full | Exploring the potential of public proteomics data |
title_fullStr | Exploring the potential of public proteomics data |
title_full_unstemmed | Exploring the potential of public proteomics data |
title_short | Exploring the potential of public proteomics data |
title_sort | exploring the potential of public proteomics data |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4738454/ https://www.ncbi.nlm.nih.gov/pubmed/26449181 http://dx.doi.org/10.1002/pmic.201500295 |
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