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Exploring the potential of public proteomics data

In a global effort for scientific transparency, it has become feasible and good practice to share experimental data supporting novel findings. Consequently, the amount of publicly available MS‐based proteomics data has grown substantially in recent years. With some notable exceptions, this extensive...

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Detalles Bibliográficos
Autores principales: Vaudel, Marc, Verheggen, Kenneth, Csordas, Attila, Ræder, Helge, Berven, Frode S., Martens, Lennart, Vizcaíno, Juan A., Barsnes, Harald
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4738454/
https://www.ncbi.nlm.nih.gov/pubmed/26449181
http://dx.doi.org/10.1002/pmic.201500295
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author Vaudel, Marc
Verheggen, Kenneth
Csordas, Attila
Ræder, Helge
Berven, Frode S.
Martens, Lennart
Vizcaíno, Juan A.
Barsnes, Harald
author_facet Vaudel, Marc
Verheggen, Kenneth
Csordas, Attila
Ræder, Helge
Berven, Frode S.
Martens, Lennart
Vizcaíno, Juan A.
Barsnes, Harald
author_sort Vaudel, Marc
collection PubMed
description In a global effort for scientific transparency, it has become feasible and good practice to share experimental data supporting novel findings. Consequently, the amount of publicly available MS‐based proteomics data has grown substantially in recent years. With some notable exceptions, this extensive material has however largely been left untouched. The time has now come for the proteomics community to utilize this potential gold mine for new discoveries, and uncover its untapped potential. In this review, we provide a brief history of the sharing of proteomics data, showing ways in which publicly available proteomics data are already being (re‐)used, and outline potential future opportunities based on four different usage types: use, reuse, reprocess, and repurpose. We thus aim to assist the proteomics community in stepping up to the challenge, and to make the most of the rapidly increasing amount of public proteomics data.
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spelling pubmed-47384542016-02-12 Exploring the potential of public proteomics data Vaudel, Marc Verheggen, Kenneth Csordas, Attila Ræder, Helge Berven, Frode S. Martens, Lennart Vizcaíno, Juan A. Barsnes, Harald Proteomics Bioinformatics In a global effort for scientific transparency, it has become feasible and good practice to share experimental data supporting novel findings. Consequently, the amount of publicly available MS‐based proteomics data has grown substantially in recent years. With some notable exceptions, this extensive material has however largely been left untouched. The time has now come for the proteomics community to utilize this potential gold mine for new discoveries, and uncover its untapped potential. In this review, we provide a brief history of the sharing of proteomics data, showing ways in which publicly available proteomics data are already being (re‐)used, and outline potential future opportunities based on four different usage types: use, reuse, reprocess, and repurpose. We thus aim to assist the proteomics community in stepping up to the challenge, and to make the most of the rapidly increasing amount of public proteomics data. John Wiley and Sons Inc. 2015-12-15 2016-01 /pmc/articles/PMC4738454/ /pubmed/26449181 http://dx.doi.org/10.1002/pmic.201500295 Text en © 2015 The Authors. Proteomics published by Wiley‐VCH Verlag GmbH & Co. KGaA, Weinheim. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinformatics
Vaudel, Marc
Verheggen, Kenneth
Csordas, Attila
Ræder, Helge
Berven, Frode S.
Martens, Lennart
Vizcaíno, Juan A.
Barsnes, Harald
Exploring the potential of public proteomics data
title Exploring the potential of public proteomics data
title_full Exploring the potential of public proteomics data
title_fullStr Exploring the potential of public proteomics data
title_full_unstemmed Exploring the potential of public proteomics data
title_short Exploring the potential of public proteomics data
title_sort exploring the potential of public proteomics data
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4738454/
https://www.ncbi.nlm.nih.gov/pubmed/26449181
http://dx.doi.org/10.1002/pmic.201500295
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