Cargando…

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

Parastagonospora nodorum, the causal agent of Septoria nodorum blotch (SNB), is an economically important pathogen of wheat (Triticum spp.), and a model for the study of necrotrophic pathology and genome evolution. The reference P. nodorum strain SN15 was the first Dothideomycete with a published ge...

Descripción completa

Detalles Bibliográficos
Autores principales:	Syme, Robert A., Tan, Kar-Chun, Hane, James K., Dodhia, Kejal, Stoll, Thomas, Hastie, Marcus, Furuki, Eiko, Ellwood, Simon R., Williams, Angela H., Tan, Yew-Foon, Testa, Alison C., Gorman, Jeffrey J., Oliver, Richard P.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4739733/ https://www.ncbi.nlm.nih.gov/pubmed/26840125 http://dx.doi.org/10.1371/journal.pone.0147221

Ejemplares similares

GWAS analysis reveals distinct pathogenicity profiles of Australian Parastagonospora nodorum isolates and identification of marker-trait-associations to septoria nodorum blotch
por: Phan, Huyen T. T., et al.
Publicado: (2021)

Genetic Structure of the Norwegian Parastagonospora nodorum Population
por: Lin, Min, et al.
Publicado: (2020)

Pan-Parastagonospora Comparative Genome Analysis—Effector Prediction and Genome Evolution
por: Syme, Robert A, et al.
Publicado: (2018)

Reference Quality Genome Assemblies of Three Parastagonospora nodorum Isolates Differing in Virulence on Wheat
por: Richards, Jonathan K., et al.
Publicado: (2017)

A genome-wide survey of the secondary metabolite biosynthesis genes in the wheat pathogen Parastagonospora nodorum
por: Chooi, Yit-Heng, et al.
Publicado: (2014)

Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome
por: Bertazzoni, Stefania, et al.
Publicado: (2021)

Interaction between the Bird Cherry-Oat Aphid (Rhopalosiphum padi) and Stagonospora Nodorum Blotch (Parastagonospora nodorum) on Wheat
por: Asalf, Belachew, et al.
Publicado: (2021)

Assessing European Wheat Sensitivities to Parastagonospora nodorum Necrotrophic Effectors and Fine-Mapping the Snn3-B1 Locus Conferring Sensitivity to the Effector SnTox3
por: Downie, Rowena C., et al.
Publicado: (2018)

Volatile Molecules Secreted by the Wheat Pathogen Parastagonospora nodorum Are Involved in Development and Phytotoxicity
por: Muria-Gonzalez, Mariano Jordi, et al.
Publicado: (2020)

Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population
por: Cockram, James, et al.
Publicado: (2015)

Novel sources of resistance to Septoria nodorum blotch in the Vavilov wheat collection identified by genome-wide association studies
por: Phan, Huyen T. T., et al.
Publicado: (2018)

Dissecting the role of histidine kinase and HOG1 mitogen-activated protein kinase signalling in stress tolerance and pathogenicity of Parastagonospora nodorum on wheat
por: John, Evan, et al.
Publicado: (2016)

Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery
por: Syme, Robert Andrew, et al.
Publicado: (2013)

Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States
por: Richards, Jonathan K., et al.
Publicado: (2019)

Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum
por: Bringans, Scott, et al.
Publicado: (2009)

A Review of the Interactions between Wheat and Wheat Pathogens: Zymoseptoria tritici, Fusarium spp. and Parastagonospora nodorum
por: Duba, Adrian, et al.
Publicado: (2018)

A Secondary Metabolite Secreted by Penicillium citrinum Is Able to Enhance Parastagonospora nodorum Sensitivity to Tebuconazole and Azoxystrobin
por: Kartashov, Maksim, et al.
Publicado: (2022)

Low Amplitude Boom-and-Bust Cycles Define the Septoria Nodorum Blotch Interaction
por: Phan, Huyen T. T., et al.
Publicado: (2020)

The Parastagonospora nodorum necrotrophic effector SnTox5 targets the wheat gene Snn5 and facilitates entry into the leaf mesophyll
por: Kariyawasam, Gayan K., et al.
Publicado: (2021)

Genetic mapping using a wheat multi-founder population reveals a locus on chromosome 2A controlling resistance to both leaf and glume blotch caused by the necrotrophic fungal pathogen Parastagonospora nodorum
por: Lin, Min, et al.
Publicado: (2020)

A triple threat: the Parastagonospora nodorum SnTox267 effector exploits three distinct host genetic factors to cause disease in wheat
por: Richards, Jonathan K., et al.
Publicado: (2021)

A proteogenomic update to Yersinia: enhancing genome annotation
por: Payne, Samuel H, et al.
Publicado: (2010)

Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes
por: Guillot, Laetitia, et al.
Publicado: (2019)

Improving the Genome Annotation of Rhizoctonia solani Using Proteogenomics
por: Shu, Jiantao, et al.
Publicado: (2021)

Gene Validation and Remodelling Using Proteogenomics of Phytophthora cinnamomi, the Causal Agent of Dieback
por: Andronis, Christina E., et al.
Publicado: (2021)

Genome-scale phylogenies reveal relationships among Parastagonospora species infecting domesticated and wild grasses
por: Croll, D., et al.
Publicado: (2021)

Proteogenomic Analysis Provides Novel Insight into Genome Annotation and Nitrogen Metabolism in Nostoc sp. PCC 7120
por: Yu, Shengchao, et al.
Publicado: (2021)

Improving the genome and proteome annotations of the marine model diatom Thalassiosira pseudonana using a proteogenomics strategy
por: Chen, Xiao-Huang, et al.
Publicado: (2023)

Assessing the efficacy of CRISPR/Cas9 genome editing in the wheat pathogen Parastagonspora nodorum
por: Khan, Haseena, et al.
Publicado: (2020)

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade
por: Christie-Oleza, Joseph A, et al.
Publicado: (2012)

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
por: Testa, Alison C, et al.
Publicado: (2015)

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis
por: Zhu, Yafeng, et al.
Publicado: (2017)

Genome-wide association mapping of septoria nodorum blotch resistance in Nordic winter and spring wheat collections
por: Lin, Min, et al.
Publicado: (2022)

Genomic Prediction of Resistance to Tan Spot, Spot Blotch and Septoria Nodorum Blotch in Synthetic Hexaploid Wheat
por: García-Barrios, Guillermo, et al.
Publicado: (2023)

Genome-wide association analysis permits characterization of Stagonospora nodorum blotch (SNB) resistance in hard winter wheat
por: AlTameemi, Rami, et al.
Publicado: (2021)

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
por: Ellwood, Simon R, et al.
Publicado: (2010)

Proteogenomic characterization of cholangiocarcinoma
por: Deng, Mengjie, et al.
Publicado: (2023)

Identification and cross-validation of genetic loci conferring resistance to Septoria nodorum blotch using a German multi-founder winter wheat population
por: Lin, Min, et al.
Publicado: (2020)

Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics
por: Imrie, Lisa, et al.
Publicado: (2019)

Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow
por: Zhu, Yafeng, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_kalnqkpjea7rtn2ko3cpkfvnfj