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A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank)

Abstract. Collaborative effort among four lead indexes of taxon names and nomenclatural acts ((IPNI), Index Fungorum, MycoBank and ZooBank) and the journals PhytoKeys, MycoKeys and ZooKeys to create an automated, pre-publication, registration workflow, based on a server-to-server, XML request/respon...

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Autores principales: Penev, Lyubomir, Paton, Alan, Nicolson, Nicola, Kirk, Paul, Pyle, Richard L., Whitton, Robert, Georgiev, Teodor, Barker, Christine, Hopkins, Christopher, Robert, Vincent, Biserkov, Jordan, Stoev, Pavel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4741224/
https://www.ncbi.nlm.nih.gov/pubmed/26877662
http://dx.doi.org/10.3897/zookeys.550.9551
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author Penev, Lyubomir
Paton, Alan
Nicolson, Nicola
Kirk, Paul
Pyle, Richard L.
Whitton, Robert
Georgiev, Teodor
Barker, Christine
Hopkins, Christopher
Robert, Vincent
Biserkov, Jordan
Stoev, Pavel
author_facet Penev, Lyubomir
Paton, Alan
Nicolson, Nicola
Kirk, Paul
Pyle, Richard L.
Whitton, Robert
Georgiev, Teodor
Barker, Christine
Hopkins, Christopher
Robert, Vincent
Biserkov, Jordan
Stoev, Pavel
author_sort Penev, Lyubomir
collection PubMed
description Abstract. Collaborative effort among four lead indexes of taxon names and nomenclatural acts ((IPNI), Index Fungorum, MycoBank and ZooBank) and the journals PhytoKeys, MycoKeys and ZooKeys to create an automated, pre-publication, registration workflow, based on a server-to-server, XML request/response model. The registration model for ZooBank uses the TaxPub schema, which is an extension to the (JATS) of the National Library of Medicine (NLM). The indexing or registration model of IPNI and Index Fungorum will use the (TCS) as a basic standard for the workflow. Other journals and publishers who intend to implement automated, pre-publication, registration of taxon names and nomenclatural acts can also use the open sample XML formats and links to schemas and relevant information published in the paper.
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spelling pubmed-47412242016-02-12 A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank) Penev, Lyubomir Paton, Alan Nicolson, Nicola Kirk, Paul Pyle, Richard L. Whitton, Robert Georgiev, Teodor Barker, Christine Hopkins, Christopher Robert, Vincent Biserkov, Jordan Stoev, Pavel Zookeys Research Article Abstract. Collaborative effort among four lead indexes of taxon names and nomenclatural acts ((IPNI), Index Fungorum, MycoBank and ZooBank) and the journals PhytoKeys, MycoKeys and ZooKeys to create an automated, pre-publication, registration workflow, based on a server-to-server, XML request/response model. The registration model for ZooBank uses the TaxPub schema, which is an extension to the (JATS) of the National Library of Medicine (NLM). The indexing or registration model of IPNI and Index Fungorum will use the (TCS) as a basic standard for the workflow. Other journals and publishers who intend to implement automated, pre-publication, registration of taxon names and nomenclatural acts can also use the open sample XML formats and links to schemas and relevant information published in the paper. Pensoft Publishers 2016-01-07 /pmc/articles/PMC4741224/ /pubmed/26877662 http://dx.doi.org/10.3897/zookeys.550.9551 Text en Lyubomir Penev, Alan Paton, Nicola Nicolson, Paul Kirk, Richard L. Pyle, Robert Whitton, Teodor Georgiev, Christine Barker, Christopher Hopkins, Vincent Robert, Jordan Biserkov, Pavel Stoev http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Penev, Lyubomir
Paton, Alan
Nicolson, Nicola
Kirk, Paul
Pyle, Richard L.
Whitton, Robert
Georgiev, Teodor
Barker, Christine
Hopkins, Christopher
Robert, Vincent
Biserkov, Jordan
Stoev, Pavel
A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank)
title A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank)
title_full A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank)
title_fullStr A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank)
title_full_unstemmed A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank)
title_short A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank)
title_sort common registration-to-publication automated pipeline for nomenclatural acts for higher plants (international plant names index, ipni), fungi (index fungorum, mycobank) and animals (zoobank)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4741224/
https://www.ncbi.nlm.nih.gov/pubmed/26877662
http://dx.doi.org/10.3897/zookeys.550.9551
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