Cargando…

openBIS ELN-LIMS: an open-source database for academic laboratories

Summary: The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document the...

Descripción completa

Detalles Bibliográficos
Autores principales: Barillari, Caterina, Ottoz, Diana S. M., Fuentes-Serna, Juan Mariano, Ramakrishnan, Chandrasekhar, Rinn, Bernd, Rudolf, Fabian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743625/
https://www.ncbi.nlm.nih.gov/pubmed/26508761
http://dx.doi.org/10.1093/bioinformatics/btv606
_version_ 1782414384108142592
author Barillari, Caterina
Ottoz, Diana S. M.
Fuentes-Serna, Juan Mariano
Ramakrishnan, Chandrasekhar
Rinn, Bernd
Rudolf, Fabian
author_facet Barillari, Caterina
Ottoz, Diana S. M.
Fuentes-Serna, Juan Mariano
Ramakrishnan, Chandrasekhar
Rinn, Bernd
Rudolf, Fabian
author_sort Barillari, Caterina
collection PubMed
description Summary: The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document their work, to describe materials and methods and to collect raw and analyzed data. The system comes with a user-friendly web interface where data can be added, edited, browsed and searched. Availability and implementation: The openBIS software, a user guide and a demo instance are available at https://openbis-eln-lims.ethz.ch. The demo instance contains some data from our laboratory as an example to demonstrate the possibilities of the ELN-LIMS (Ottoz et al., 2014). For rapid local testing, a VirtualBox image of the ELN-LIMS is also available. Contact: brinn@ethz.ch or fabian.rudolf@bsse.ethz.ch
format Online
Article
Text
id pubmed-4743625
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-47436252016-02-08 openBIS ELN-LIMS: an open-source database for academic laboratories Barillari, Caterina Ottoz, Diana S. M. Fuentes-Serna, Juan Mariano Ramakrishnan, Chandrasekhar Rinn, Bernd Rudolf, Fabian Bioinformatics Applications Notes Summary: The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document their work, to describe materials and methods and to collect raw and analyzed data. The system comes with a user-friendly web interface where data can be added, edited, browsed and searched. Availability and implementation: The openBIS software, a user guide and a demo instance are available at https://openbis-eln-lims.ethz.ch. The demo instance contains some data from our laboratory as an example to demonstrate the possibilities of the ELN-LIMS (Ottoz et al., 2014). For rapid local testing, a VirtualBox image of the ELN-LIMS is also available. Contact: brinn@ethz.ch or fabian.rudolf@bsse.ethz.ch Oxford University Press 2016-02-15 2015-10-27 /pmc/articles/PMC4743625/ /pubmed/26508761 http://dx.doi.org/10.1093/bioinformatics/btv606 Text en © The Author 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Barillari, Caterina
Ottoz, Diana S. M.
Fuentes-Serna, Juan Mariano
Ramakrishnan, Chandrasekhar
Rinn, Bernd
Rudolf, Fabian
openBIS ELN-LIMS: an open-source database for academic laboratories
title openBIS ELN-LIMS: an open-source database for academic laboratories
title_full openBIS ELN-LIMS: an open-source database for academic laboratories
title_fullStr openBIS ELN-LIMS: an open-source database for academic laboratories
title_full_unstemmed openBIS ELN-LIMS: an open-source database for academic laboratories
title_short openBIS ELN-LIMS: an open-source database for academic laboratories
title_sort openbis eln-lims: an open-source database for academic laboratories
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743625/
https://www.ncbi.nlm.nih.gov/pubmed/26508761
http://dx.doi.org/10.1093/bioinformatics/btv606
work_keys_str_mv AT barillaricaterina openbiselnlimsanopensourcedatabaseforacademiclaboratories
AT ottozdianasm openbiselnlimsanopensourcedatabaseforacademiclaboratories
AT fuentessernajuanmariano openbiselnlimsanopensourcedatabaseforacademiclaboratories
AT ramakrishnanchandrasekhar openbiselnlimsanopensourcedatabaseforacademiclaboratories
AT rinnbernd openbiselnlimsanopensourcedatabaseforacademiclaboratories
AT rudolffabian openbiselnlimsanopensourcedatabaseforacademiclaboratories