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Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida
Environmental metabolomics studies employing earthworms as sentinels for soil contamination are numerous, but the instability of the metabolite extracts from these organisms has been minimally addressed. This study evaluated the efficacy of adding a heat-treatment step in two commonly used extractio...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4744258/ https://www.ncbi.nlm.nih.gov/pubmed/26893595 http://dx.doi.org/10.1007/s11306-016-0967-z |
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author | Schock, Tracey B. Strickland, Sheri Steele, Edna J. Bearden, Daniel W. |
author_facet | Schock, Tracey B. Strickland, Sheri Steele, Edna J. Bearden, Daniel W. |
author_sort | Schock, Tracey B. |
collection | PubMed |
description | Environmental metabolomics studies employing earthworms as sentinels for soil contamination are numerous, but the instability of the metabolite extracts from these organisms has been minimally addressed. This study evaluated the efficacy of adding a heat-treatment step in two commonly used extraction protocols (Bligh and Dyer and D(2)O phosphate buffer) as a pre-analytical stabilization method. The resulting metabolic profiles of Eisenia fetida were assessed using principal component analysis and NMR spectral evaluations. The heated Bligh and Dyer extractions produced stabilized profiles with minimal variation of the extracted metabolomic profiles over time, providing a more suitable method for metabolomic analysis of earthworm extracts. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s11306-016-0967-z) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4744258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-47442582016-02-16 Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida Schock, Tracey B. Strickland, Sheri Steele, Edna J. Bearden, Daniel W. Metabolomics Short Communication Environmental metabolomics studies employing earthworms as sentinels for soil contamination are numerous, but the instability of the metabolite extracts from these organisms has been minimally addressed. This study evaluated the efficacy of adding a heat-treatment step in two commonly used extraction protocols (Bligh and Dyer and D(2)O phosphate buffer) as a pre-analytical stabilization method. The resulting metabolic profiles of Eisenia fetida were assessed using principal component analysis and NMR spectral evaluations. The heated Bligh and Dyer extractions produced stabilized profiles with minimal variation of the extracted metabolomic profiles over time, providing a more suitable method for metabolomic analysis of earthworm extracts. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s11306-016-0967-z) contains supplementary material, which is available to authorized users. Springer US 2016-02-05 2016 /pmc/articles/PMC4744258/ /pubmed/26893595 http://dx.doi.org/10.1007/s11306-016-0967-z Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Short Communication Schock, Tracey B. Strickland, Sheri Steele, Edna J. Bearden, Daniel W. Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida |
title | Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida |
title_full | Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida |
title_fullStr | Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida |
title_full_unstemmed | Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida |
title_short | Effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm Eisenia fetida |
title_sort | effects of heat-treatment on the stability and composition of metabolomic extracts from the earthworm eisenia fetida |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4744258/ https://www.ncbi.nlm.nih.gov/pubmed/26893595 http://dx.doi.org/10.1007/s11306-016-0967-z |
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