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Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology
Partial wave spectroscopy (PWS) enables quantification of the statistical properties of cell structures at the nanoscale, which has been used to identify patients harboring premalignant tumors by interrogating easily accessible sites distant from location of the lesion. Due to its high sensitivity,...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745312/ https://www.ncbi.nlm.nih.gov/pubmed/26904682 http://dx.doi.org/10.1155/2016/6090912 |
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author | Miao, Qin Derbas, Justin Eid, Aya Subramanian, Hariharan Backman, Vadim |
author_facet | Miao, Qin Derbas, Justin Eid, Aya Subramanian, Hariharan Backman, Vadim |
author_sort | Miao, Qin |
collection | PubMed |
description | Partial wave spectroscopy (PWS) enables quantification of the statistical properties of cell structures at the nanoscale, which has been used to identify patients harboring premalignant tumors by interrogating easily accessible sites distant from location of the lesion. Due to its high sensitivity, cells that are well preserved need to be selected from the smear images for further analysis. To date, such cell selection has been done manually. This is time-consuming, is labor-intensive, is vulnerable to bias, and has considerable inter- and intraoperator variability. In this study, we developed a classification scheme to identify and remove the corrupted cells or debris that are of no diagnostic value from raw smear images. The slide of smear sample is digitized by acquiring and stitching low-magnification transmission. Objects are then extracted from these images through segmentation algorithms. A training-set is created by manually classifying objects as suitable or unsuitable. A feature-set is created by quantifying a large number of features for each object. The training-set and feature-set are used to train a selection algorithm using Support Vector Machine (SVM) classifiers. We show that the selection algorithm achieves an error rate of 93% with a sensitivity of 95%. |
format | Online Article Text |
id | pubmed-4745312 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-47453122016-02-22 Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology Miao, Qin Derbas, Justin Eid, Aya Subramanian, Hariharan Backman, Vadim Biomed Res Int Research Article Partial wave spectroscopy (PWS) enables quantification of the statistical properties of cell structures at the nanoscale, which has been used to identify patients harboring premalignant tumors by interrogating easily accessible sites distant from location of the lesion. Due to its high sensitivity, cells that are well preserved need to be selected from the smear images for further analysis. To date, such cell selection has been done manually. This is time-consuming, is labor-intensive, is vulnerable to bias, and has considerable inter- and intraoperator variability. In this study, we developed a classification scheme to identify and remove the corrupted cells or debris that are of no diagnostic value from raw smear images. The slide of smear sample is digitized by acquiring and stitching low-magnification transmission. Objects are then extracted from these images through segmentation algorithms. A training-set is created by manually classifying objects as suitable or unsuitable. A feature-set is created by quantifying a large number of features for each object. The training-set and feature-set are used to train a selection algorithm using Support Vector Machine (SVM) classifiers. We show that the selection algorithm achieves an error rate of 93% with a sensitivity of 95%. Hindawi Publishing Corporation 2016 2016-01-19 /pmc/articles/PMC4745312/ /pubmed/26904682 http://dx.doi.org/10.1155/2016/6090912 Text en Copyright © 2016 Qin Miao et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Miao, Qin Derbas, Justin Eid, Aya Subramanian, Hariharan Backman, Vadim Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology |
title | Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology |
title_full | Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology |
title_fullStr | Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology |
title_full_unstemmed | Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology |
title_short | Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology |
title_sort | automated cell selection using support vector machine for application to spectral nanocytology |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745312/ https://www.ncbi.nlm.nih.gov/pubmed/26904682 http://dx.doi.org/10.1155/2016/6090912 |
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