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Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology

Partial wave spectroscopy (PWS) enables quantification of the statistical properties of cell structures at the nanoscale, which has been used to identify patients harboring premalignant tumors by interrogating easily accessible sites distant from location of the lesion. Due to its high sensitivity,...

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Detalles Bibliográficos
Autores principales: Miao, Qin, Derbas, Justin, Eid, Aya, Subramanian, Hariharan, Backman, Vadim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745312/
https://www.ncbi.nlm.nih.gov/pubmed/26904682
http://dx.doi.org/10.1155/2016/6090912
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author Miao, Qin
Derbas, Justin
Eid, Aya
Subramanian, Hariharan
Backman, Vadim
author_facet Miao, Qin
Derbas, Justin
Eid, Aya
Subramanian, Hariharan
Backman, Vadim
author_sort Miao, Qin
collection PubMed
description Partial wave spectroscopy (PWS) enables quantification of the statistical properties of cell structures at the nanoscale, which has been used to identify patients harboring premalignant tumors by interrogating easily accessible sites distant from location of the lesion. Due to its high sensitivity, cells that are well preserved need to be selected from the smear images for further analysis. To date, such cell selection has been done manually. This is time-consuming, is labor-intensive, is vulnerable to bias, and has considerable inter- and intraoperator variability. In this study, we developed a classification scheme to identify and remove the corrupted cells or debris that are of no diagnostic value from raw smear images. The slide of smear sample is digitized by acquiring and stitching low-magnification transmission. Objects are then extracted from these images through segmentation algorithms. A training-set is created by manually classifying objects as suitable or unsuitable. A feature-set is created by quantifying a large number of features for each object. The training-set and feature-set are used to train a selection algorithm using Support Vector Machine (SVM) classifiers. We show that the selection algorithm achieves an error rate of 93% with a sensitivity of 95%.
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spelling pubmed-47453122016-02-22 Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology Miao, Qin Derbas, Justin Eid, Aya Subramanian, Hariharan Backman, Vadim Biomed Res Int Research Article Partial wave spectroscopy (PWS) enables quantification of the statistical properties of cell structures at the nanoscale, which has been used to identify patients harboring premalignant tumors by interrogating easily accessible sites distant from location of the lesion. Due to its high sensitivity, cells that are well preserved need to be selected from the smear images for further analysis. To date, such cell selection has been done manually. This is time-consuming, is labor-intensive, is vulnerable to bias, and has considerable inter- and intraoperator variability. In this study, we developed a classification scheme to identify and remove the corrupted cells or debris that are of no diagnostic value from raw smear images. The slide of smear sample is digitized by acquiring and stitching low-magnification transmission. Objects are then extracted from these images through segmentation algorithms. A training-set is created by manually classifying objects as suitable or unsuitable. A feature-set is created by quantifying a large number of features for each object. The training-set and feature-set are used to train a selection algorithm using Support Vector Machine (SVM) classifiers. We show that the selection algorithm achieves an error rate of 93% with a sensitivity of 95%. Hindawi Publishing Corporation 2016 2016-01-19 /pmc/articles/PMC4745312/ /pubmed/26904682 http://dx.doi.org/10.1155/2016/6090912 Text en Copyright © 2016 Qin Miao et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Miao, Qin
Derbas, Justin
Eid, Aya
Subramanian, Hariharan
Backman, Vadim
Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology
title Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology
title_full Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology
title_fullStr Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology
title_full_unstemmed Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology
title_short Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology
title_sort automated cell selection using support vector machine for application to spectral nanocytology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745312/
https://www.ncbi.nlm.nih.gov/pubmed/26904682
http://dx.doi.org/10.1155/2016/6090912
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