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Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira

Leptospirosis is a worldwide zoonosis caused by an infection with the pathogenic species of Leptospira. We have developed a loop-mediated isothermal amplification (LAMP) assay to detect the DNA of Leptospira spp. Six sets of primers targeting the gene of the subsurface protein, lipL32, were evaluate...

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Autores principales: Chen, Hua-Wei, Weissenberger, Giulia, Atkins, Erin, Chao, Chien-Chung, Suputtamongkol, Yupin, Ching, Wei-Mei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745460/
https://www.ncbi.nlm.nih.gov/pubmed/26904743
http://dx.doi.org/10.1155/2015/147173
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author Chen, Hua-Wei
Weissenberger, Giulia
Atkins, Erin
Chao, Chien-Chung
Suputtamongkol, Yupin
Ching, Wei-Mei
author_facet Chen, Hua-Wei
Weissenberger, Giulia
Atkins, Erin
Chao, Chien-Chung
Suputtamongkol, Yupin
Ching, Wei-Mei
author_sort Chen, Hua-Wei
collection PubMed
description Leptospirosis is a worldwide zoonosis caused by an infection with the pathogenic species of Leptospira. We have developed a loop-mediated isothermal amplification (LAMP) assay to detect the DNA of Leptospira spp. Six sets of primers targeting the gene of the subsurface protein, lipL32, were evaluated for their detection sensitivity. The best primer set detected less than 25 copies of lipL32 per reaction of both plasmid DNA template and purified leptospiral genomic DNA. By combining primers targeting lipL32 with the previously published primer set targeting lipL41, the sensitivity of the assay was improved to 12 copies of L. interrogans. The specificity of the LAMP assay was evaluated by using the genomic DNA from other clinically encountered bacterial species such as different strains of Orientia tsutsugamushi, Rickettsia typhi, Rickettsia conorii, Rickettsia rickettsii, Coxiella burnetii, and Bartonella bacilliformis. These genomic DNA samples were all negative in our LAMP assay. The sensitivity of the LAMP assay was very similar to that of quantitative real time PCR. Several detection methods for the amplified product of LAMP assay were performed to demonstrate the simplicity of the assay. In summary, our results have suggested that this assay is rapid, robust, and easy to perform and has the potential to be used in endemic locations.
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spelling pubmed-47454602016-02-22 Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira Chen, Hua-Wei Weissenberger, Giulia Atkins, Erin Chao, Chien-Chung Suputtamongkol, Yupin Ching, Wei-Mei Int J Bacteriol Research Article Leptospirosis is a worldwide zoonosis caused by an infection with the pathogenic species of Leptospira. We have developed a loop-mediated isothermal amplification (LAMP) assay to detect the DNA of Leptospira spp. Six sets of primers targeting the gene of the subsurface protein, lipL32, were evaluated for their detection sensitivity. The best primer set detected less than 25 copies of lipL32 per reaction of both plasmid DNA template and purified leptospiral genomic DNA. By combining primers targeting lipL32 with the previously published primer set targeting lipL41, the sensitivity of the assay was improved to 12 copies of L. interrogans. The specificity of the LAMP assay was evaluated by using the genomic DNA from other clinically encountered bacterial species such as different strains of Orientia tsutsugamushi, Rickettsia typhi, Rickettsia conorii, Rickettsia rickettsii, Coxiella burnetii, and Bartonella bacilliformis. These genomic DNA samples were all negative in our LAMP assay. The sensitivity of the LAMP assay was very similar to that of quantitative real time PCR. Several detection methods for the amplified product of LAMP assay were performed to demonstrate the simplicity of the assay. In summary, our results have suggested that this assay is rapid, robust, and easy to perform and has the potential to be used in endemic locations. Hindawi Publishing Corporation 2015 2015-01-27 /pmc/articles/PMC4745460/ /pubmed/26904743 http://dx.doi.org/10.1155/2015/147173 Text en Copyright © 2015 Hua-Wei Chen et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Chen, Hua-Wei
Weissenberger, Giulia
Atkins, Erin
Chao, Chien-Chung
Suputtamongkol, Yupin
Ching, Wei-Mei
Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira
title Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira
title_full Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira
title_fullStr Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira
title_full_unstemmed Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira
title_short Highly Sensitive Loop-Mediated Isothermal Amplification for the Detection of Leptospira
title_sort highly sensitive loop-mediated isothermal amplification for the detection of leptospira
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745460/
https://www.ncbi.nlm.nih.gov/pubmed/26904743
http://dx.doi.org/10.1155/2015/147173
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