Cargando…
Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)
Many genomes are incorrectly identified at GenBank. We developed a plan to find and correct misidentified genomes using genomic comparison statistics together with a scaffold of reliably identified genomes from type. A workshop was organized with broad representation from the bacterial taxonomic com...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2016
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748488/ http://dx.doi.org/10.1186/s40793-016-0134-1 |
| _version_ | 1782415125423063040 |
|---|---|
| author | Federhen, Scott Rossello-Mora, Ramon Klenk, Hans-Peter Tindall, Brian J. Konstantinidis, Konstantinos T. Whitman, William B. Brown, Daniel Labeda, David Ussery, David Garrity, George M. Colwell, Rita R. Hasan, Nur Graf, Joerg Parte, Aidan Yarza, Pablo Goldberg, Brittany Sichtig, Heike Karsch-Mizrachi, Ilene Clark, Karen McVeigh, Richard Pruitt, Kim D. Tatusova, Tatiana Falk, Robert Turner, Seán Madden, Thomas Kitts, Paul Kimchi, Avi Klimke, William Agarwala, Richa DiCuccio, Michael Ostell, James |
| author_facet | Federhen, Scott Rossello-Mora, Ramon Klenk, Hans-Peter Tindall, Brian J. Konstantinidis, Konstantinos T. Whitman, William B. Brown, Daniel Labeda, David Ussery, David Garrity, George M. Colwell, Rita R. Hasan, Nur Graf, Joerg Parte, Aidan Yarza, Pablo Goldberg, Brittany Sichtig, Heike Karsch-Mizrachi, Ilene Clark, Karen McVeigh, Richard Pruitt, Kim D. Tatusova, Tatiana Falk, Robert Turner, Seán Madden, Thomas Kitts, Paul Kimchi, Avi Klimke, William Agarwala, Richa DiCuccio, Michael Ostell, James |
| author_sort | Federhen, Scott |
| collection | PubMed |
| description | Many genomes are incorrectly identified at GenBank. We developed a plan to find and correct misidentified genomes using genomic comparison statistics together with a scaffold of reliably identified genomes from type. A workshop was organized with broad representation from the bacterial taxonomic community to review the proposal, the GenBank Microbial Genomic Taxonomy Workshop, Bethesda MD, May 12–13, 2015. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0134-1) contains supplementary material, which is available to authorized users. |
| format | Online Article Text |
| id | pubmed-4748488 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2016 |
| publisher | BioMed Central |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-47484882016-02-11 Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) Federhen, Scott Rossello-Mora, Ramon Klenk, Hans-Peter Tindall, Brian J. Konstantinidis, Konstantinos T. Whitman, William B. Brown, Daniel Labeda, David Ussery, David Garrity, George M. Colwell, Rita R. Hasan, Nur Graf, Joerg Parte, Aidan Yarza, Pablo Goldberg, Brittany Sichtig, Heike Karsch-Mizrachi, Ilene Clark, Karen McVeigh, Richard Pruitt, Kim D. Tatusova, Tatiana Falk, Robert Turner, Seán Madden, Thomas Kitts, Paul Kimchi, Avi Klimke, William Agarwala, Richa DiCuccio, Michael Ostell, James Stand Genomic Sci Meeting Report Many genomes are incorrectly identified at GenBank. We developed a plan to find and correct misidentified genomes using genomic comparison statistics together with a scaffold of reliably identified genomes from type. A workshop was organized with broad representation from the bacterial taxonomic community to review the proposal, the GenBank Microbial Genomic Taxonomy Workshop, Bethesda MD, May 12–13, 2015. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0134-1) contains supplementary material, which is available to authorized users. BioMed Central 2016-02-09 /pmc/articles/PMC4748488/ http://dx.doi.org/10.1186/s40793-016-0134-1 Text en © Federhen et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
| spellingShingle | Meeting Report Federhen, Scott Rossello-Mora, Ramon Klenk, Hans-Peter Tindall, Brian J. Konstantinidis, Konstantinos T. Whitman, William B. Brown, Daniel Labeda, David Ussery, David Garrity, George M. Colwell, Rita R. Hasan, Nur Graf, Joerg Parte, Aidan Yarza, Pablo Goldberg, Brittany Sichtig, Heike Karsch-Mizrachi, Ilene Clark, Karen McVeigh, Richard Pruitt, Kim D. Tatusova, Tatiana Falk, Robert Turner, Seán Madden, Thomas Kitts, Paul Kimchi, Avi Klimke, William Agarwala, Richa DiCuccio, Michael Ostell, James Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) |
| title | Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) |
| title_full | Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) |
| title_fullStr | Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) |
| title_full_unstemmed | Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) |
| title_short | Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) |
| title_sort | meeting report: genbank microbial genomic taxonomy workshop (12–13 may, 2015) |
| topic | Meeting Report |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748488/ http://dx.doi.org/10.1186/s40793-016-0134-1 |
| work_keys_str_mv | AT federhenscott meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT rossellomoraramon meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT klenkhanspeter meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT tindallbrianj meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT konstantinidiskonstantinost meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT whitmanwilliamb meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT browndaniel meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT labedadavid meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT usserydavid meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT garritygeorgem meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT colwellritar meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT hasannur meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT grafjoerg meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT parteaidan meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT yarzapablo meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT goldbergbrittany meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT sichtigheike meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT karschmizrachiilene meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT clarkkaren meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT mcveighrichard meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT pruittkimd meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT tatusovatatiana meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT falkrobert meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT turnersean meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT maddenthomas meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT kittspaul meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT kimchiavi meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT klimkewilliam meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT agarwalaricha meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT dicucciomichael meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 AT ostelljames meetingreportgenbankmicrobialgenomictaxonomyworkshop1213may2015 |