Cargando…

A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities

BACKGROUND: Cellulose, an abundant and renewable polysaccharides, constitutes the largest resource for bioconversion of biofuels. Plant polysaccharides hydrolysis is catalyzed by cellulases, which include endoglucanases, exoglucanases, and β-glucosidases. Converting cellulose and hemicellulose to sh...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhou, Yu, Wang, Xu, Wei, Wei, Xu, Jimin, Wang, Wei, Xie, Zhongwen, Zhang, Zhengzhu, Jiang, Hongchen, Wang, Qi, Wei, Chaoling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752780/
https://www.ncbi.nlm.nih.gov/pubmed/26877766
http://dx.doi.org/10.1186/s13068-016-0449-6
_version_ 1782415789749436416
author Zhou, Yu
Wang, Xu
Wei, Wei
Xu, Jimin
Wang, Wei
Xie, Zhongwen
Zhang, Zhengzhu
Jiang, Hongchen
Wang, Qi
Wei, Chaoling
author_facet Zhou, Yu
Wang, Xu
Wei, Wei
Xu, Jimin
Wang, Wei
Xie, Zhongwen
Zhang, Zhengzhu
Jiang, Hongchen
Wang, Qi
Wei, Chaoling
author_sort Zhou, Yu
collection PubMed
description BACKGROUND: Cellulose, an abundant and renewable polysaccharides, constitutes the largest resource for bioconversion of biofuels. Plant polysaccharides hydrolysis is catalyzed by cellulases, which include endoglucanases, exoglucanases, and β-glucosidases. Converting cellulose and hemicellulose to short chains of oligosaccharides by endo-/exoglucanases is the key step for biofuel transformation. Intriguingly, β-glucanases with transglycosylation activity not only can relieve product inhibition of glucan hydrolysis but also has potential application as biocatalysts for functional materials. RESULTS: Here, a metagenomic fosmid library was constructed from a paddy soil for cellulase screening. One purified clone showing carboxymethylcellulase activity was isolated, and the complete β-glucanase gene (umcel9y-1) was cloned and overexpressed in Escherichia coli. Phylogenetic analysis indicated that β-glucanase Umcel9y-1 belonged to the theme C of glycoside hydrolase family 9. Amino acids sequence showed 58.4 % similarity between Umcel9y-1 and its closest characterized reference, cellulase Cel01. Biological characterization showed that Umcel9y-1 was an efficient endoglucanase and also exhibited high activities of exoglucanase and transglycosylation. The transglycosylation products of Umcel9y-1 including sophorose, laminaribiose, and gentiobiose, and transglycosylation was detected under all activated conditions. The order of catalytic efficiency for polysaccharides, cellooligosaccharides, and aryl-β-glycosides was p-nitrophenol-D-cellobioside, barley glucan, cellopentaose, cellotetraose, cellotriose, hydroxyethylcellulose, cellohexose, laminarin, and carboxymethylcellulose, respectively. The barley glucan was the optimal polysaccharides for Umcel9y-1 with K(m) and K(cat)/K(m) values of 13.700 mM and 239.152 s(−1) mM(−1), respectively. CONCLUSION: Biological characterizations of recombinant Umcel9y-1 showed that the versatile β-glucanase had efficient endoglucanase activity to barley glucan and also exhibited high activities of exoglucanase and transglycosylation. The optimum conditions of recombinant Umcel9y-1 was pH 6.5–7.0 at 37 °C with predominant halotolerance and high-thermal stability. These results indicate that the novel metagenomic-derived β-glucanase may be a potent candidate for industrial applications. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13068-016-0449-6) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-4752780
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-47527802016-02-14 A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities Zhou, Yu Wang, Xu Wei, Wei Xu, Jimin Wang, Wei Xie, Zhongwen Zhang, Zhengzhu Jiang, Hongchen Wang, Qi Wei, Chaoling Biotechnol Biofuels Research BACKGROUND: Cellulose, an abundant and renewable polysaccharides, constitutes the largest resource for bioconversion of biofuels. Plant polysaccharides hydrolysis is catalyzed by cellulases, which include endoglucanases, exoglucanases, and β-glucosidases. Converting cellulose and hemicellulose to short chains of oligosaccharides by endo-/exoglucanases is the key step for biofuel transformation. Intriguingly, β-glucanases with transglycosylation activity not only can relieve product inhibition of glucan hydrolysis but also has potential application as biocatalysts for functional materials. RESULTS: Here, a metagenomic fosmid library was constructed from a paddy soil for cellulase screening. One purified clone showing carboxymethylcellulase activity was isolated, and the complete β-glucanase gene (umcel9y-1) was cloned and overexpressed in Escherichia coli. Phylogenetic analysis indicated that β-glucanase Umcel9y-1 belonged to the theme C of glycoside hydrolase family 9. Amino acids sequence showed 58.4 % similarity between Umcel9y-1 and its closest characterized reference, cellulase Cel01. Biological characterization showed that Umcel9y-1 was an efficient endoglucanase and also exhibited high activities of exoglucanase and transglycosylation. The transglycosylation products of Umcel9y-1 including sophorose, laminaribiose, and gentiobiose, and transglycosylation was detected under all activated conditions. The order of catalytic efficiency for polysaccharides, cellooligosaccharides, and aryl-β-glycosides was p-nitrophenol-D-cellobioside, barley glucan, cellopentaose, cellotetraose, cellotriose, hydroxyethylcellulose, cellohexose, laminarin, and carboxymethylcellulose, respectively. The barley glucan was the optimal polysaccharides for Umcel9y-1 with K(m) and K(cat)/K(m) values of 13.700 mM and 239.152 s(−1) mM(−1), respectively. CONCLUSION: Biological characterizations of recombinant Umcel9y-1 showed that the versatile β-glucanase had efficient endoglucanase activity to barley glucan and also exhibited high activities of exoglucanase and transglycosylation. The optimum conditions of recombinant Umcel9y-1 was pH 6.5–7.0 at 37 °C with predominant halotolerance and high-thermal stability. These results indicate that the novel metagenomic-derived β-glucanase may be a potent candidate for industrial applications. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13068-016-0449-6) contains supplementary material, which is available to authorized users. BioMed Central 2016-02-13 /pmc/articles/PMC4752780/ /pubmed/26877766 http://dx.doi.org/10.1186/s13068-016-0449-6 Text en © Zhou et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Zhou, Yu
Wang, Xu
Wei, Wei
Xu, Jimin
Wang, Wei
Xie, Zhongwen
Zhang, Zhengzhu
Jiang, Hongchen
Wang, Qi
Wei, Chaoling
A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities
title A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities
title_full A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities
title_fullStr A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities
title_full_unstemmed A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities
title_short A novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities
title_sort novel efficient β-glucanase from a paddy soil microbial metagenome with versatile activities
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752780/
https://www.ncbi.nlm.nih.gov/pubmed/26877766
http://dx.doi.org/10.1186/s13068-016-0449-6
work_keys_str_mv AT zhouyu anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT wangxu anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT weiwei anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT xujimin anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT wangwei anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT xiezhongwen anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT zhangzhengzhu anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT jianghongchen anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT wangqi anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT weichaoling anovelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT zhouyu novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT wangxu novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT weiwei novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT xujimin novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT wangwei novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT xiezhongwen novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT zhangzhengzhu novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT jianghongchen novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT wangqi novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities
AT weichaoling novelefficientbglucanasefromapaddysoilmicrobialmetagenomewithversatileactivities