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The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA
Psocids are important stored product pests found worldwide that can be spread through grain trade. Most stored-product psocids, including eggs, nymphs, and adults, are very small (~1 mm) and difficult to identify morphologically. Here, we collected 10 economically important stored-product Liposcelis...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4754681/ https://www.ncbi.nlm.nih.gov/pubmed/26880378 http://dx.doi.org/10.1038/srep21022 |
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author | Zhao, Zi-Hua Cui, Bing-Yi Li, Zhi-Hong Jiang, Fan Yang, Qian-Qian Kučerová, Zuzana Stejskal, Václav Opit, George Cao, Yang Li, Fu-Jun |
author_facet | Zhao, Zi-Hua Cui, Bing-Yi Li, Zhi-Hong Jiang, Fan Yang, Qian-Qian Kučerová, Zuzana Stejskal, Václav Opit, George Cao, Yang Li, Fu-Jun |
author_sort | Zhao, Zi-Hua |
collection | PubMed |
description | Psocids are important stored product pests found worldwide that can be spread through grain trade. Most stored-product psocids, including eggs, nymphs, and adults, are very small (~1 mm) and difficult to identify morphologically. Here, we collected 10 economically important stored-product Liposcelis spp. psocids (L. bostrychophila, L. entomophila, L. decolor, L. paeta, L. brunnea, L. corrodens, L. mendax, L. rufa, L. pearmani, and L. tricolor) from 35 geographical locations in 5 countries (China, Czech Republic, Denmark, Germany, and the United States). The ITS2 rDNA gene was extracted and sequenced. The interspecific genetic distance of the stored-product psocids was significantly higher than the intraspecific genetic distance according to the barcoding gap analysis. Ten pairs of species-specific primers based on the ITS2 rDNA were developed for psocid identification. The sensitivity estimation indicated that the species-specific primers could correctly amplify the target ITS2 gene and successfully identify psocids at 1.0 ng/mL. Additionally, these species-specific primers could quantify specificity and identify 10 stored-product psocids; this approach could also be used to accurately identify other stored-product psocids. This work provides a practical approach for the precise examination of 10 stored-product psocid species and also contributes to the development of an identification method using ITS2 rDNA. |
format | Online Article Text |
id | pubmed-4754681 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-47546812016-02-24 The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA Zhao, Zi-Hua Cui, Bing-Yi Li, Zhi-Hong Jiang, Fan Yang, Qian-Qian Kučerová, Zuzana Stejskal, Václav Opit, George Cao, Yang Li, Fu-Jun Sci Rep Article Psocids are important stored product pests found worldwide that can be spread through grain trade. Most stored-product psocids, including eggs, nymphs, and adults, are very small (~1 mm) and difficult to identify morphologically. Here, we collected 10 economically important stored-product Liposcelis spp. psocids (L. bostrychophila, L. entomophila, L. decolor, L. paeta, L. brunnea, L. corrodens, L. mendax, L. rufa, L. pearmani, and L. tricolor) from 35 geographical locations in 5 countries (China, Czech Republic, Denmark, Germany, and the United States). The ITS2 rDNA gene was extracted and sequenced. The interspecific genetic distance of the stored-product psocids was significantly higher than the intraspecific genetic distance according to the barcoding gap analysis. Ten pairs of species-specific primers based on the ITS2 rDNA were developed for psocid identification. The sensitivity estimation indicated that the species-specific primers could correctly amplify the target ITS2 gene and successfully identify psocids at 1.0 ng/mL. Additionally, these species-specific primers could quantify specificity and identify 10 stored-product psocids; this approach could also be used to accurately identify other stored-product psocids. This work provides a practical approach for the precise examination of 10 stored-product psocid species and also contributes to the development of an identification method using ITS2 rDNA. Nature Publishing Group 2016-02-16 /pmc/articles/PMC4754681/ /pubmed/26880378 http://dx.doi.org/10.1038/srep21022 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Zhao, Zi-Hua Cui, Bing-Yi Li, Zhi-Hong Jiang, Fan Yang, Qian-Qian Kučerová, Zuzana Stejskal, Václav Opit, George Cao, Yang Li, Fu-Jun The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA |
title | The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA |
title_full | The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA |
title_fullStr | The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA |
title_full_unstemmed | The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA |
title_short | The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA |
title_sort | establishment of species-specific primers for the molecular identification of ten stored-product psocids based on its2 rdna |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4754681/ https://www.ncbi.nlm.nih.gov/pubmed/26880378 http://dx.doi.org/10.1038/srep21022 |
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