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The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA

Psocids are important stored product pests found worldwide that can be spread through grain trade. Most stored-product psocids, including eggs, nymphs, and adults, are very small (~1 mm) and difficult to identify morphologically. Here, we collected 10 economically important stored-product Liposcelis...

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Autores principales: Zhao, Zi-Hua, Cui, Bing-Yi, Li, Zhi-Hong, Jiang, Fan, Yang, Qian-Qian, Kučerová, Zuzana, Stejskal, Václav, Opit, George, Cao, Yang, Li, Fu-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4754681/
https://www.ncbi.nlm.nih.gov/pubmed/26880378
http://dx.doi.org/10.1038/srep21022
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author Zhao, Zi-Hua
Cui, Bing-Yi
Li, Zhi-Hong
Jiang, Fan
Yang, Qian-Qian
Kučerová, Zuzana
Stejskal, Václav
Opit, George
Cao, Yang
Li, Fu-Jun
author_facet Zhao, Zi-Hua
Cui, Bing-Yi
Li, Zhi-Hong
Jiang, Fan
Yang, Qian-Qian
Kučerová, Zuzana
Stejskal, Václav
Opit, George
Cao, Yang
Li, Fu-Jun
author_sort Zhao, Zi-Hua
collection PubMed
description Psocids are important stored product pests found worldwide that can be spread through grain trade. Most stored-product psocids, including eggs, nymphs, and adults, are very small (~1 mm) and difficult to identify morphologically. Here, we collected 10 economically important stored-product Liposcelis spp. psocids (L. bostrychophila, L. entomophila, L. decolor, L. paeta, L. brunnea, L. corrodens, L. mendax, L. rufa, L. pearmani, and L. tricolor) from 35 geographical locations in 5 countries (China, Czech Republic, Denmark, Germany, and the United States). The ITS2 rDNA gene was extracted and sequenced. The interspecific genetic distance of the stored-product psocids was significantly higher than the intraspecific genetic distance according to the barcoding gap analysis. Ten pairs of species-specific primers based on the ITS2 rDNA were developed for psocid identification. The sensitivity estimation indicated that the species-specific primers could correctly amplify the target ITS2 gene and successfully identify psocids at 1.0 ng/mL. Additionally, these species-specific primers could quantify specificity and identify 10 stored-product psocids; this approach could also be used to accurately identify other stored-product psocids. This work provides a practical approach for the precise examination of 10 stored-product psocid species and also contributes to the development of an identification method using ITS2 rDNA.
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spelling pubmed-47546812016-02-24 The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA Zhao, Zi-Hua Cui, Bing-Yi Li, Zhi-Hong Jiang, Fan Yang, Qian-Qian Kučerová, Zuzana Stejskal, Václav Opit, George Cao, Yang Li, Fu-Jun Sci Rep Article Psocids are important stored product pests found worldwide that can be spread through grain trade. Most stored-product psocids, including eggs, nymphs, and adults, are very small (~1 mm) and difficult to identify morphologically. Here, we collected 10 economically important stored-product Liposcelis spp. psocids (L. bostrychophila, L. entomophila, L. decolor, L. paeta, L. brunnea, L. corrodens, L. mendax, L. rufa, L. pearmani, and L. tricolor) from 35 geographical locations in 5 countries (China, Czech Republic, Denmark, Germany, and the United States). The ITS2 rDNA gene was extracted and sequenced. The interspecific genetic distance of the stored-product psocids was significantly higher than the intraspecific genetic distance according to the barcoding gap analysis. Ten pairs of species-specific primers based on the ITS2 rDNA were developed for psocid identification. The sensitivity estimation indicated that the species-specific primers could correctly amplify the target ITS2 gene and successfully identify psocids at 1.0 ng/mL. Additionally, these species-specific primers could quantify specificity and identify 10 stored-product psocids; this approach could also be used to accurately identify other stored-product psocids. This work provides a practical approach for the precise examination of 10 stored-product psocid species and also contributes to the development of an identification method using ITS2 rDNA. Nature Publishing Group 2016-02-16 /pmc/articles/PMC4754681/ /pubmed/26880378 http://dx.doi.org/10.1038/srep21022 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Zhao, Zi-Hua
Cui, Bing-Yi
Li, Zhi-Hong
Jiang, Fan
Yang, Qian-Qian
Kučerová, Zuzana
Stejskal, Václav
Opit, George
Cao, Yang
Li, Fu-Jun
The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA
title The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA
title_full The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA
title_fullStr The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA
title_full_unstemmed The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA
title_short The establishment of species-specific primers for the molecular identification of ten stored-product psocids based on ITS2 rDNA
title_sort establishment of species-specific primers for the molecular identification of ten stored-product psocids based on its2 rdna
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4754681/
https://www.ncbi.nlm.nih.gov/pubmed/26880378
http://dx.doi.org/10.1038/srep21022
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