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Seqotron: a user-friendly sequence editor for Mac OS X
BACKGROUND: Accurate multiple sequence alignment is central to bioinformatics and molecular evolutionary analyses. Although sophisticated sequence alignment programs are available, manual adjustments are often required to improve alignment quality. Unfortunately, few programs offer a simple and intu...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4756450/ https://www.ncbi.nlm.nih.gov/pubmed/26887850 http://dx.doi.org/10.1186/s13104-016-1927-4 |
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author | Fourment, Mathieu Holmes, Edward C. |
author_facet | Fourment, Mathieu Holmes, Edward C. |
author_sort | Fourment, Mathieu |
collection | PubMed |
description | BACKGROUND: Accurate multiple sequence alignment is central to bioinformatics and molecular evolutionary analyses. Although sophisticated sequence alignment programs are available, manual adjustments are often required to improve alignment quality. Unfortunately, few programs offer a simple and intuitive way to edit sequence alignments. RESULTS: We present Seqotron, a sequence editor that reads and writes files in a wide variety of sequence formats. Sequences can be easily aligned and manually edited using the mouse and keyboard. The program also allows the user to estimate both phylogenetic trees and distance matrices. CONCLUSIONS: Seqotron will benefit researchers who need to manipulate and align complex sequence data. Seqotron is a Mac OS X compatible open source project and is available from Github https://github.com/4ment/seqotron/. |
format | Online Article Text |
id | pubmed-4756450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-47564502016-02-18 Seqotron: a user-friendly sequence editor for Mac OS X Fourment, Mathieu Holmes, Edward C. BMC Res Notes Technical Note BACKGROUND: Accurate multiple sequence alignment is central to bioinformatics and molecular evolutionary analyses. Although sophisticated sequence alignment programs are available, manual adjustments are often required to improve alignment quality. Unfortunately, few programs offer a simple and intuitive way to edit sequence alignments. RESULTS: We present Seqotron, a sequence editor that reads and writes files in a wide variety of sequence formats. Sequences can be easily aligned and manually edited using the mouse and keyboard. The program also allows the user to estimate both phylogenetic trees and distance matrices. CONCLUSIONS: Seqotron will benefit researchers who need to manipulate and align complex sequence data. Seqotron is a Mac OS X compatible open source project and is available from Github https://github.com/4ment/seqotron/. BioMed Central 2016-02-17 /pmc/articles/PMC4756450/ /pubmed/26887850 http://dx.doi.org/10.1186/s13104-016-1927-4 Text en © Fourment and Holmes. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Technical Note Fourment, Mathieu Holmes, Edward C. Seqotron: a user-friendly sequence editor for Mac OS X |
title | Seqotron: a user-friendly sequence editor for Mac OS X |
title_full | Seqotron: a user-friendly sequence editor for Mac OS X |
title_fullStr | Seqotron: a user-friendly sequence editor for Mac OS X |
title_full_unstemmed | Seqotron: a user-friendly sequence editor for Mac OS X |
title_short | Seqotron: a user-friendly sequence editor for Mac OS X |
title_sort | seqotron: a user-friendly sequence editor for mac os x |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4756450/ https://www.ncbi.nlm.nih.gov/pubmed/26887850 http://dx.doi.org/10.1186/s13104-016-1927-4 |
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