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Seqotron: a user-friendly sequence editor for Mac OS X

BACKGROUND: Accurate multiple sequence alignment is central to bioinformatics and molecular evolutionary analyses. Although sophisticated sequence alignment programs are available, manual adjustments are often required to improve alignment quality. Unfortunately, few programs offer a simple and intu...

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Detalles Bibliográficos
Autores principales: Fourment, Mathieu, Holmes, Edward C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4756450/
https://www.ncbi.nlm.nih.gov/pubmed/26887850
http://dx.doi.org/10.1186/s13104-016-1927-4
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author Fourment, Mathieu
Holmes, Edward C.
author_facet Fourment, Mathieu
Holmes, Edward C.
author_sort Fourment, Mathieu
collection PubMed
description BACKGROUND: Accurate multiple sequence alignment is central to bioinformatics and molecular evolutionary analyses. Although sophisticated sequence alignment programs are available, manual adjustments are often required to improve alignment quality. Unfortunately, few programs offer a simple and intuitive way to edit sequence alignments. RESULTS: We present Seqotron, a sequence editor that reads and writes files in a wide variety of sequence formats. Sequences can be easily aligned and manually edited using the mouse and keyboard. The program also allows the user to estimate both phylogenetic trees and distance matrices. CONCLUSIONS: Seqotron will benefit researchers who need to manipulate and align complex sequence data. Seqotron is a Mac OS X compatible open source project and is available from Github https://github.com/4ment/seqotron/.
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spelling pubmed-47564502016-02-18 Seqotron: a user-friendly sequence editor for Mac OS X Fourment, Mathieu Holmes, Edward C. BMC Res Notes Technical Note BACKGROUND: Accurate multiple sequence alignment is central to bioinformatics and molecular evolutionary analyses. Although sophisticated sequence alignment programs are available, manual adjustments are often required to improve alignment quality. Unfortunately, few programs offer a simple and intuitive way to edit sequence alignments. RESULTS: We present Seqotron, a sequence editor that reads and writes files in a wide variety of sequence formats. Sequences can be easily aligned and manually edited using the mouse and keyboard. The program also allows the user to estimate both phylogenetic trees and distance matrices. CONCLUSIONS: Seqotron will benefit researchers who need to manipulate and align complex sequence data. Seqotron is a Mac OS X compatible open source project and is available from Github https://github.com/4ment/seqotron/. BioMed Central 2016-02-17 /pmc/articles/PMC4756450/ /pubmed/26887850 http://dx.doi.org/10.1186/s13104-016-1927-4 Text en © Fourment and Holmes. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Technical Note
Fourment, Mathieu
Holmes, Edward C.
Seqotron: a user-friendly sequence editor for Mac OS X
title Seqotron: a user-friendly sequence editor for Mac OS X
title_full Seqotron: a user-friendly sequence editor for Mac OS X
title_fullStr Seqotron: a user-friendly sequence editor for Mac OS X
title_full_unstemmed Seqotron: a user-friendly sequence editor for Mac OS X
title_short Seqotron: a user-friendly sequence editor for Mac OS X
title_sort seqotron: a user-friendly sequence editor for mac os x
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4756450/
https://www.ncbi.nlm.nih.gov/pubmed/26887850
http://dx.doi.org/10.1186/s13104-016-1927-4
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