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Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study
Behçet’s disease (BD) is a chronic, relapsing, multisystemic inflammatory disorder with unanswered questions regarding its etiology/pathogenesis and classification. Distinct manifestation based subsets, pronounced geographical variations in expression, and discrepant immunological abnormalities rais...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4758705/ https://www.ncbi.nlm.nih.gov/pubmed/26890122 http://dx.doi.org/10.1371/journal.pone.0149052 |
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author | Oğuz, Ali Kemal Yılmaz, Seda Taşır Oygür, Çağdaş Şahap Çandar, Tuba Sayın, Irmak Kılıçoğlu, Sibel Serin Ergün, İhsan Ateş, Aşkın Özdağ, Hilal Akar, Nejat |
author_facet | Oğuz, Ali Kemal Yılmaz, Seda Taşır Oygür, Çağdaş Şahap Çandar, Tuba Sayın, Irmak Kılıçoğlu, Sibel Serin Ergün, İhsan Ateş, Aşkın Özdağ, Hilal Akar, Nejat |
author_sort | Oğuz, Ali Kemal |
collection | PubMed |
description | Behçet’s disease (BD) is a chronic, relapsing, multisystemic inflammatory disorder with unanswered questions regarding its etiology/pathogenesis and classification. Distinct manifestation based subsets, pronounced geographical variations in expression, and discrepant immunological abnormalities raised the question whether Behçet’s is “a disease or a syndrome”. To answer the preceding question we aimed to display and compare the molecular mechanisms underlying distinct subsets of BD. For this purpose, the expression data of the gene expression profiling and association study on BD by Xavier et al (2013) was retrieved from GEO database and reanalysed by gene expression data analysis/visualization and bioinformatics enrichment tools. There were 15 BD patients (B) and 14 controls (C). Three subsets of BD patients were generated: MB (isolated mucocutaneous manifestations, n = 7), OB (ocular involvement, n = 4), and VB (large vein thrombosis, n = 4). Class comparison analyses yielded the following numbers of differentially expressed genes (DEGs); B vs C: 4, MB vs C: 5, OB vs C: 151, VB vs C: 274, MB vs OB: 215, MB vs VB: 760, OB vs VB: 984. Venn diagram analysis showed that there were no common DEGs in the intersection “MB vs C” ∩ “OB vs C” ∩ “VB vs C”. Cluster analyses successfully clustered distinct expressions of BD. During gene ontology term enrichment analyses, categories with relevance to IL-8 production (MB vs C) and immune response to microorganisms (OB vs C) were differentially enriched. Distinct subsets of BD display distinct expression profiles and different disease associated pathways. Based on these clear discrepancies, the designation as “Behçet’s syndrome” (BS) should be encouraged and future research should take into consideration the immunogenetic heterogeneity of BS subsets. Four gene groups, namely, negative regulators of inflammation (CD69, CLEC12A, CLEC12B, TNFAIP3), neutrophil granule proteins (LTF, OLFM4, AZU1, MMP8, DEFA4, CAMP), antigen processing and presentation proteins (CTSS, ERAP1), and regulators of immune response (LGALS2, BCL10, ITCH, CEACAM8, CD36, IL8, CCL4, EREG, NFKBIZ, CCR2, CD180, KLRC4, NFAT5) appear to be instrumental in BS immunopathogenesis. |
format | Online Article Text |
id | pubmed-4758705 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-47587052016-02-26 Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study Oğuz, Ali Kemal Yılmaz, Seda Taşır Oygür, Çağdaş Şahap Çandar, Tuba Sayın, Irmak Kılıçoğlu, Sibel Serin Ergün, İhsan Ateş, Aşkın Özdağ, Hilal Akar, Nejat PLoS One Research Article Behçet’s disease (BD) is a chronic, relapsing, multisystemic inflammatory disorder with unanswered questions regarding its etiology/pathogenesis and classification. Distinct manifestation based subsets, pronounced geographical variations in expression, and discrepant immunological abnormalities raised the question whether Behçet’s is “a disease or a syndrome”. To answer the preceding question we aimed to display and compare the molecular mechanisms underlying distinct subsets of BD. For this purpose, the expression data of the gene expression profiling and association study on BD by Xavier et al (2013) was retrieved from GEO database and reanalysed by gene expression data analysis/visualization and bioinformatics enrichment tools. There were 15 BD patients (B) and 14 controls (C). Three subsets of BD patients were generated: MB (isolated mucocutaneous manifestations, n = 7), OB (ocular involvement, n = 4), and VB (large vein thrombosis, n = 4). Class comparison analyses yielded the following numbers of differentially expressed genes (DEGs); B vs C: 4, MB vs C: 5, OB vs C: 151, VB vs C: 274, MB vs OB: 215, MB vs VB: 760, OB vs VB: 984. Venn diagram analysis showed that there were no common DEGs in the intersection “MB vs C” ∩ “OB vs C” ∩ “VB vs C”. Cluster analyses successfully clustered distinct expressions of BD. During gene ontology term enrichment analyses, categories with relevance to IL-8 production (MB vs C) and immune response to microorganisms (OB vs C) were differentially enriched. Distinct subsets of BD display distinct expression profiles and different disease associated pathways. Based on these clear discrepancies, the designation as “Behçet’s syndrome” (BS) should be encouraged and future research should take into consideration the immunogenetic heterogeneity of BS subsets. Four gene groups, namely, negative regulators of inflammation (CD69, CLEC12A, CLEC12B, TNFAIP3), neutrophil granule proteins (LTF, OLFM4, AZU1, MMP8, DEFA4, CAMP), antigen processing and presentation proteins (CTSS, ERAP1), and regulators of immune response (LGALS2, BCL10, ITCH, CEACAM8, CD36, IL8, CCL4, EREG, NFKBIZ, CCR2, CD180, KLRC4, NFAT5) appear to be instrumental in BS immunopathogenesis. Public Library of Science 2016-02-18 /pmc/articles/PMC4758705/ /pubmed/26890122 http://dx.doi.org/10.1371/journal.pone.0149052 Text en © 2016 Oğuz et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Oğuz, Ali Kemal Yılmaz, Seda Taşır Oygür, Çağdaş Şahap Çandar, Tuba Sayın, Irmak Kılıçoğlu, Sibel Serin Ergün, İhsan Ateş, Aşkın Özdağ, Hilal Akar, Nejat Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study |
title | Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study |
title_full | Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study |
title_fullStr | Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study |
title_full_unstemmed | Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study |
title_short | Behçet's: A Disease or a Syndrome? Answer from an Expression Profiling Study |
title_sort | behçet's: a disease or a syndrome? answer from an expression profiling study |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4758705/ https://www.ncbi.nlm.nih.gov/pubmed/26890122 http://dx.doi.org/10.1371/journal.pone.0149052 |
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