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Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)
PREMISE OF THE STUDY: Dioon (Zamiaceae) is an endangered North American cycad genus of evolutionary and ornamental value. We designed and validated a set of microsatellite markers from D. edule that can be used for population-level and conservation studies, and that transferred successfully to D. an...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4760746/ https://www.ncbi.nlm.nih.gov/pubmed/26949574 http://dx.doi.org/10.3732/apps.1500087 |
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author | Prado, Alberto Cervantes-Díaz, Fret Perez-Zavala, Francisco G. González-Astorga, Jorge Bede, Jacqueline C. Cibrián-Jaramillo, Angélica |
author_facet | Prado, Alberto Cervantes-Díaz, Fret Perez-Zavala, Francisco G. González-Astorga, Jorge Bede, Jacqueline C. Cibrián-Jaramillo, Angélica |
author_sort | Prado, Alberto |
collection | PubMed |
description | PREMISE OF THE STUDY: Dioon (Zamiaceae) is an endangered North American cycad genus of evolutionary and ornamental value. We designed and validated a set of microsatellite markers from D. edule that can be used for population-level and conservation studies, and that transferred successfully to D. angustifolium, D. spinulosum, and D. holmgrenii. METHODS AND RESULTS: We tested 50 primers from 80 microsatellite candidate loci in the OneKP D. edule transcriptome. Genotypes from 21 loci in 20 D. edule individuals revealed up to 14 alleles per locus and observed heterozygosity from 0.15 to 0.92; one locus was monomorphic. Seven of those 21 loci were polymorphic in D. angustifolium, D. spinulosum, and D. holmgrenii, with up to seven alleles, and an observed heterozygosity up to 0.89. CONCLUSIONS: The transcriptome-derived microsatellites generated here will serve as tools to advance population genetic studies and inform conservation strategies of Dioon, including the identification and origin of illegal plants in the cycad trade. |
format | Online Article Text |
id | pubmed-4760746 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-47607462016-03-04 Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) Prado, Alberto Cervantes-Díaz, Fret Perez-Zavala, Francisco G. González-Astorga, Jorge Bede, Jacqueline C. Cibrián-Jaramillo, Angélica Appl Plant Sci Primer Note PREMISE OF THE STUDY: Dioon (Zamiaceae) is an endangered North American cycad genus of evolutionary and ornamental value. We designed and validated a set of microsatellite markers from D. edule that can be used for population-level and conservation studies, and that transferred successfully to D. angustifolium, D. spinulosum, and D. holmgrenii. METHODS AND RESULTS: We tested 50 primers from 80 microsatellite candidate loci in the OneKP D. edule transcriptome. Genotypes from 21 loci in 20 D. edule individuals revealed up to 14 alleles per locus and observed heterozygosity from 0.15 to 0.92; one locus was monomorphic. Seven of those 21 loci were polymorphic in D. angustifolium, D. spinulosum, and D. holmgrenii, with up to seven alleles, and an observed heterozygosity up to 0.89. CONCLUSIONS: The transcriptome-derived microsatellites generated here will serve as tools to advance population genetic studies and inform conservation strategies of Dioon, including the identification and origin of illegal plants in the cycad trade. Botanical Society of America 2016-02-12 /pmc/articles/PMC4760746/ /pubmed/26949574 http://dx.doi.org/10.3732/apps.1500087 Text en © 2016 Prado et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Prado, Alberto Cervantes-Díaz, Fret Perez-Zavala, Francisco G. González-Astorga, Jorge Bede, Jacqueline C. Cibrián-Jaramillo, Angélica Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) |
title | Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) |
title_full | Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) |
title_fullStr | Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) |
title_full_unstemmed | Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) |
title_short | Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) |
title_sort | transcriptome-derived microsatellite markers for dioon (zamiaceae) cycad species(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4760746/ https://www.ncbi.nlm.nih.gov/pubmed/26949574 http://dx.doi.org/10.3732/apps.1500087 |
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