Cargando…

Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)

PREMISE OF THE STUDY: Dioon (Zamiaceae) is an endangered North American cycad genus of evolutionary and ornamental value. We designed and validated a set of microsatellite markers from D. edule that can be used for population-level and conservation studies, and that transferred successfully to D. an...

Descripción completa

Detalles Bibliográficos
Autores principales: Prado, Alberto, Cervantes-Díaz, Fret, Perez-Zavala, Francisco G., González-Astorga, Jorge, Bede, Jacqueline C., Cibrián-Jaramillo, Angélica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4760746/
https://www.ncbi.nlm.nih.gov/pubmed/26949574
http://dx.doi.org/10.3732/apps.1500087
_version_ 1782416900096000000
author Prado, Alberto
Cervantes-Díaz, Fret
Perez-Zavala, Francisco G.
González-Astorga, Jorge
Bede, Jacqueline C.
Cibrián-Jaramillo, Angélica
author_facet Prado, Alberto
Cervantes-Díaz, Fret
Perez-Zavala, Francisco G.
González-Astorga, Jorge
Bede, Jacqueline C.
Cibrián-Jaramillo, Angélica
author_sort Prado, Alberto
collection PubMed
description PREMISE OF THE STUDY: Dioon (Zamiaceae) is an endangered North American cycad genus of evolutionary and ornamental value. We designed and validated a set of microsatellite markers from D. edule that can be used for population-level and conservation studies, and that transferred successfully to D. angustifolium, D. spinulosum, and D. holmgrenii. METHODS AND RESULTS: We tested 50 primers from 80 microsatellite candidate loci in the OneKP D. edule transcriptome. Genotypes from 21 loci in 20 D. edule individuals revealed up to 14 alleles per locus and observed heterozygosity from 0.15 to 0.92; one locus was monomorphic. Seven of those 21 loci were polymorphic in D. angustifolium, D. spinulosum, and D. holmgrenii, with up to seven alleles, and an observed heterozygosity up to 0.89. CONCLUSIONS: The transcriptome-derived microsatellites generated here will serve as tools to advance population genetic studies and inform conservation strategies of Dioon, including the identification and origin of illegal plants in the cycad trade.
format Online
Article
Text
id pubmed-4760746
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-47607462016-03-04 Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1) Prado, Alberto Cervantes-Díaz, Fret Perez-Zavala, Francisco G. González-Astorga, Jorge Bede, Jacqueline C. Cibrián-Jaramillo, Angélica Appl Plant Sci Primer Note PREMISE OF THE STUDY: Dioon (Zamiaceae) is an endangered North American cycad genus of evolutionary and ornamental value. We designed and validated a set of microsatellite markers from D. edule that can be used for population-level and conservation studies, and that transferred successfully to D. angustifolium, D. spinulosum, and D. holmgrenii. METHODS AND RESULTS: We tested 50 primers from 80 microsatellite candidate loci in the OneKP D. edule transcriptome. Genotypes from 21 loci in 20 D. edule individuals revealed up to 14 alleles per locus and observed heterozygosity from 0.15 to 0.92; one locus was monomorphic. Seven of those 21 loci were polymorphic in D. angustifolium, D. spinulosum, and D. holmgrenii, with up to seven alleles, and an observed heterozygosity up to 0.89. CONCLUSIONS: The transcriptome-derived microsatellites generated here will serve as tools to advance population genetic studies and inform conservation strategies of Dioon, including the identification and origin of illegal plants in the cycad trade. Botanical Society of America 2016-02-12 /pmc/articles/PMC4760746/ /pubmed/26949574 http://dx.doi.org/10.3732/apps.1500087 Text en © 2016 Prado et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Prado, Alberto
Cervantes-Díaz, Fret
Perez-Zavala, Francisco G.
González-Astorga, Jorge
Bede, Jacqueline C.
Cibrián-Jaramillo, Angélica
Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)
title Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)
title_full Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)
title_fullStr Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)
title_full_unstemmed Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)
title_short Transcriptome-derived microsatellite markers for Dioon (Zamiaceae) cycad species(1)
title_sort transcriptome-derived microsatellite markers for dioon (zamiaceae) cycad species(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4760746/
https://www.ncbi.nlm.nih.gov/pubmed/26949574
http://dx.doi.org/10.3732/apps.1500087
work_keys_str_mv AT pradoalberto transcriptomederivedmicrosatellitemarkersfordioonzamiaceaecycadspecies1
AT cervantesdiazfret transcriptomederivedmicrosatellitemarkersfordioonzamiaceaecycadspecies1
AT perezzavalafranciscog transcriptomederivedmicrosatellitemarkersfordioonzamiaceaecycadspecies1
AT gonzalezastorgajorge transcriptomederivedmicrosatellitemarkersfordioonzamiaceaecycadspecies1
AT bedejacquelinec transcriptomederivedmicrosatellitemarkersfordioonzamiaceaecycadspecies1
AT cibrianjaramilloangelica transcriptomederivedmicrosatellitemarkersfordioonzamiaceaecycadspecies1