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An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images
Pigment epithelium detachment (PED) is an important clinical manifestation of multiple chorioretinal diseases, which can cause loss of central vision. In this paper, an automated framework is proposed to segment serous PED in SD-OCT images. The proposed framework consists of four main steps: first,...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4761989/ https://www.ncbi.nlm.nih.gov/pubmed/26899236 http://dx.doi.org/10.1038/srep21739 |
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author | Sun, Zhuli Chen, Haoyu Shi, Fei Wang, Lirong Zhu, Weifang Xiang, Dehui Yan, Chenglin Li, Liang Chen, Xinjian |
author_facet | Sun, Zhuli Chen, Haoyu Shi, Fei Wang, Lirong Zhu, Weifang Xiang, Dehui Yan, Chenglin Li, Liang Chen, Xinjian |
author_sort | Sun, Zhuli |
collection | PubMed |
description | Pigment epithelium detachment (PED) is an important clinical manifestation of multiple chorioretinal diseases, which can cause loss of central vision. In this paper, an automated framework is proposed to segment serous PED in SD-OCT images. The proposed framework consists of four main steps: first, a multi-scale graph search method is applied to segment abnormal retinal layers; second, an effective AdaBoost method is applied to refine the initial segmented regions based on 62 extracted features; third, a shape-constrained graph cut method is applied to segment serous PED, in which the foreground and background seeds are obtained automatically; finally, an adaptive structure elements based morphology method is applied to remove false positive segmented regions. The proposed framework was tested on 25 SD-OCT volumes from 25 patients diagnosed with serous PED. The average true positive volume fraction (TPVF), false positive volume fraction (FPVF), dice similarity coefficient (DSC) and positive predictive value (PPV) are 90.08%, 0.22%, 91.20% and 92.62%, respectively. The proposed framework can provide clinicians with accurate quantitative information, including shape, size and position of the PED region, which can assist clinical diagnosis and treatment. |
format | Online Article Text |
id | pubmed-4761989 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-47619892016-02-29 An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images Sun, Zhuli Chen, Haoyu Shi, Fei Wang, Lirong Zhu, Weifang Xiang, Dehui Yan, Chenglin Li, Liang Chen, Xinjian Sci Rep Article Pigment epithelium detachment (PED) is an important clinical manifestation of multiple chorioretinal diseases, which can cause loss of central vision. In this paper, an automated framework is proposed to segment serous PED in SD-OCT images. The proposed framework consists of four main steps: first, a multi-scale graph search method is applied to segment abnormal retinal layers; second, an effective AdaBoost method is applied to refine the initial segmented regions based on 62 extracted features; third, a shape-constrained graph cut method is applied to segment serous PED, in which the foreground and background seeds are obtained automatically; finally, an adaptive structure elements based morphology method is applied to remove false positive segmented regions. The proposed framework was tested on 25 SD-OCT volumes from 25 patients diagnosed with serous PED. The average true positive volume fraction (TPVF), false positive volume fraction (FPVF), dice similarity coefficient (DSC) and positive predictive value (PPV) are 90.08%, 0.22%, 91.20% and 92.62%, respectively. The proposed framework can provide clinicians with accurate quantitative information, including shape, size and position of the PED region, which can assist clinical diagnosis and treatment. Nature Publishing Group 2016-02-22 /pmc/articles/PMC4761989/ /pubmed/26899236 http://dx.doi.org/10.1038/srep21739 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Sun, Zhuli Chen, Haoyu Shi, Fei Wang, Lirong Zhu, Weifang Xiang, Dehui Yan, Chenglin Li, Liang Chen, Xinjian An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images |
title | An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images |
title_full | An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images |
title_fullStr | An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images |
title_full_unstemmed | An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images |
title_short | An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images |
title_sort | automated framework for 3d serous pigment epithelium detachment segmentation in sd-oct images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4761989/ https://www.ncbi.nlm.nih.gov/pubmed/26899236 http://dx.doi.org/10.1038/srep21739 |
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