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Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection

Different tumor types vary greatly in their distribution of driver substitutions. Here, we analyzed how mutation and natural selection contribute to differences in the distribution of KRAS driver substitutions between lung, colon and pancreatic adenocarcinomas. We were able to demonstrate that both...

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Autores principales: Ostrow, Sheli L., Simon, Einav, Prinz, Elad, Bick, Tova, Shentzer, Talia, Nagawkar, Sima S., Sabo, Edmond, Ben-Izhak, Ofer, Hershberg, Ruth, Hershkovitz, Dov
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4763303/
https://www.ncbi.nlm.nih.gov/pubmed/26902163
http://dx.doi.org/10.1038/srep21927
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author Ostrow, Sheli L.
Simon, Einav
Prinz, Elad
Bick, Tova
Shentzer, Talia
Nagawkar, Sima S.
Sabo, Edmond
Ben-Izhak, Ofer
Hershberg, Ruth
Hershkovitz, Dov
author_facet Ostrow, Sheli L.
Simon, Einav
Prinz, Elad
Bick, Tova
Shentzer, Talia
Nagawkar, Sima S.
Sabo, Edmond
Ben-Izhak, Ofer
Hershberg, Ruth
Hershkovitz, Dov
author_sort Ostrow, Sheli L.
collection PubMed
description Different tumor types vary greatly in their distribution of driver substitutions. Here, we analyzed how mutation and natural selection contribute to differences in the distribution of KRAS driver substitutions between lung, colon and pancreatic adenocarcinomas. We were able to demonstrate that both differences in mutation and differences in selection drive variation in the distribution of KRAS driver substitutions between tumor types. By accounting for the effects of mutation on the distribution of KRAS driver substitutions, we could identify specific KRAS driver substitutions that are more favored by selection in specific tumor types. Such driver substitutions likely improve fitness most when they occur within the context of the tumor type in which they are preferentially favored. Fitting with this, we found that driver substitutions that are more favored by natural selection in a specific type of tumor tend to associate with worse clinical outcomes specifically in that type of tumor.
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spelling pubmed-47633032016-03-01 Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection Ostrow, Sheli L. Simon, Einav Prinz, Elad Bick, Tova Shentzer, Talia Nagawkar, Sima S. Sabo, Edmond Ben-Izhak, Ofer Hershberg, Ruth Hershkovitz, Dov Sci Rep Article Different tumor types vary greatly in their distribution of driver substitutions. Here, we analyzed how mutation and natural selection contribute to differences in the distribution of KRAS driver substitutions between lung, colon and pancreatic adenocarcinomas. We were able to demonstrate that both differences in mutation and differences in selection drive variation in the distribution of KRAS driver substitutions between tumor types. By accounting for the effects of mutation on the distribution of KRAS driver substitutions, we could identify specific KRAS driver substitutions that are more favored by selection in specific tumor types. Such driver substitutions likely improve fitness most when they occur within the context of the tumor type in which they are preferentially favored. Fitting with this, we found that driver substitutions that are more favored by natural selection in a specific type of tumor tend to associate with worse clinical outcomes specifically in that type of tumor. Nature Publishing Group 2016-02-23 /pmc/articles/PMC4763303/ /pubmed/26902163 http://dx.doi.org/10.1038/srep21927 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Ostrow, Sheli L.
Simon, Einav
Prinz, Elad
Bick, Tova
Shentzer, Talia
Nagawkar, Sima S.
Sabo, Edmond
Ben-Izhak, Ofer
Hershberg, Ruth
Hershkovitz, Dov
Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection
title Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection
title_full Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection
title_fullStr Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection
title_full_unstemmed Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection
title_short Variation in KRAS driver substitution distributions between tumor types is determined by both mutation and natural selection
title_sort variation in kras driver substitution distributions between tumor types is determined by both mutation and natural selection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4763303/
https://www.ncbi.nlm.nih.gov/pubmed/26902163
http://dx.doi.org/10.1038/srep21927
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