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Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction
Introduced by Bishop et al. in 1996, Generative Topographic Mapping (GTM) is a powerful nonlinear latent variable modeling approach for visualizing high-dimensional data. It has shown useful when typical linear methods fail. However, GTM still suffers from drawbacks. Its complex parameterization of...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4764361/ https://www.ncbi.nlm.nih.gov/pubmed/26905728 http://dx.doi.org/10.1371/journal.pone.0129122 |
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author | Han, Chao House, Leanna Leman, Scotland C. |
author_facet | Han, Chao House, Leanna Leman, Scotland C. |
author_sort | Han, Chao |
collection | PubMed |
description | Introduced by Bishop et al. in 1996, Generative Topographic Mapping (GTM) is a powerful nonlinear latent variable modeling approach for visualizing high-dimensional data. It has shown useful when typical linear methods fail. However, GTM still suffers from drawbacks. Its complex parameterization of data make GTM hard to fit and sensitive to slight changes in the model. For this reason, we extend GTM to a visual analytics framework so that users may guide the parameterization and assess the data from multiple GTM perspectives. Specifically, we develop the theory and methods for Visual to Parametric Interaction (V2PI) with data using GTM visualizations. The result is a dynamic version of GTM that fosters data exploration. We refer to the new version as V2PI-GTM. In this paper, we develop V2PI-GTM in stages and demonstrate its benefits within the context of a text mining case study. |
format | Online Article Text |
id | pubmed-4764361 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-47643612016-03-07 Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction Han, Chao House, Leanna Leman, Scotland C. PLoS One Research Article Introduced by Bishop et al. in 1996, Generative Topographic Mapping (GTM) is a powerful nonlinear latent variable modeling approach for visualizing high-dimensional data. It has shown useful when typical linear methods fail. However, GTM still suffers from drawbacks. Its complex parameterization of data make GTM hard to fit and sensitive to slight changes in the model. For this reason, we extend GTM to a visual analytics framework so that users may guide the parameterization and assess the data from multiple GTM perspectives. Specifically, we develop the theory and methods for Visual to Parametric Interaction (V2PI) with data using GTM visualizations. The result is a dynamic version of GTM that fosters data exploration. We refer to the new version as V2PI-GTM. In this paper, we develop V2PI-GTM in stages and demonstrate its benefits within the context of a text mining case study. Public Library of Science 2016-02-23 /pmc/articles/PMC4764361/ /pubmed/26905728 http://dx.doi.org/10.1371/journal.pone.0129122 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication. |
spellingShingle | Research Article Han, Chao House, Leanna Leman, Scotland C. Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction |
title | Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction |
title_full | Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction |
title_fullStr | Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction |
title_full_unstemmed | Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction |
title_short | Expert-Guided Generative Topographical Modeling with Visual to Parametric Interaction |
title_sort | expert-guided generative topographical modeling with visual to parametric interaction |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4764361/ https://www.ncbi.nlm.nih.gov/pubmed/26905728 http://dx.doi.org/10.1371/journal.pone.0129122 |
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