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Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile

Leptospirillum ferriphilum Sp-Cl is a Gram negative, thermotolerant, curved, rod-shaped bacterium, isolated from an industrial bioleaching operation in northern Chile, where chalcocite is the major copper mineral and copper hydroxychloride atacamite is present in variable proportions in the ore. Thi...

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Autores principales: Issotta, Francisco, Galleguillos, Pedro A., Moya-Beltrán, Ana, Davis-Belmar, Carol S., Rautenbach, George, Covarrubias, Paulo C., Acosta, Mauricio, Ossandon, Francisco J., Contador, Yasna, Holmes, David S., Marín-Eliantonio, Sabrina, Quatrini, Raquel, Demergasso, Cecilia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4769503/
https://www.ncbi.nlm.nih.gov/pubmed/26925196
http://dx.doi.org/10.1186/s40793-016-0142-1
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author Issotta, Francisco
Galleguillos, Pedro A.
Moya-Beltrán, Ana
Davis-Belmar, Carol S.
Rautenbach, George
Covarrubias, Paulo C.
Acosta, Mauricio
Ossandon, Francisco J.
Contador, Yasna
Holmes, David S.
Marín-Eliantonio, Sabrina
Quatrini, Raquel
Demergasso, Cecilia
author_facet Issotta, Francisco
Galleguillos, Pedro A.
Moya-Beltrán, Ana
Davis-Belmar, Carol S.
Rautenbach, George
Covarrubias, Paulo C.
Acosta, Mauricio
Ossandon, Francisco J.
Contador, Yasna
Holmes, David S.
Marín-Eliantonio, Sabrina
Quatrini, Raquel
Demergasso, Cecilia
author_sort Issotta, Francisco
collection PubMed
description Leptospirillum ferriphilum Sp-Cl is a Gram negative, thermotolerant, curved, rod-shaped bacterium, isolated from an industrial bioleaching operation in northern Chile, where chalcocite is the major copper mineral and copper hydroxychloride atacamite is present in variable proportions in the ore. This strain has unique features as compared to the other members of the species, namely resistance to elevated concentrations of chloride, sulfate and metals. Basic microbiological features and genomic properties of this biotechnologically relevant strain are described in this work. The 2,475,669 bp draft genome is arranged into 74 scaffolds of 74 contigs. A total of 48 RNA genes and 2,834 protein coding genes were predicted from its annotation; 55 % of these were assigned a putative function. Release of the genome sequence of this strain will provide further understanding of the mechanisms used by acidophilic bacteria to endure high osmotic stress and high chloride levels and of the role of chloride-tolerant iron-oxidizers in industrial bioleaching operations.
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spelling pubmed-47695032016-02-28 Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile Issotta, Francisco Galleguillos, Pedro A. Moya-Beltrán, Ana Davis-Belmar, Carol S. Rautenbach, George Covarrubias, Paulo C. Acosta, Mauricio Ossandon, Francisco J. Contador, Yasna Holmes, David S. Marín-Eliantonio, Sabrina Quatrini, Raquel Demergasso, Cecilia Stand Genomic Sci Short Genome Report Leptospirillum ferriphilum Sp-Cl is a Gram negative, thermotolerant, curved, rod-shaped bacterium, isolated from an industrial bioleaching operation in northern Chile, where chalcocite is the major copper mineral and copper hydroxychloride atacamite is present in variable proportions in the ore. This strain has unique features as compared to the other members of the species, namely resistance to elevated concentrations of chloride, sulfate and metals. Basic microbiological features and genomic properties of this biotechnologically relevant strain are described in this work. The 2,475,669 bp draft genome is arranged into 74 scaffolds of 74 contigs. A total of 48 RNA genes and 2,834 protein coding genes were predicted from its annotation; 55 % of these were assigned a putative function. Release of the genome sequence of this strain will provide further understanding of the mechanisms used by acidophilic bacteria to endure high osmotic stress and high chloride levels and of the role of chloride-tolerant iron-oxidizers in industrial bioleaching operations. BioMed Central 2016-02-27 /pmc/articles/PMC4769503/ /pubmed/26925196 http://dx.doi.org/10.1186/s40793-016-0142-1 Text en © Issotta et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Issotta, Francisco
Galleguillos, Pedro A.
Moya-Beltrán, Ana
Davis-Belmar, Carol S.
Rautenbach, George
Covarrubias, Paulo C.
Acosta, Mauricio
Ossandon, Francisco J.
Contador, Yasna
Holmes, David S.
Marín-Eliantonio, Sabrina
Quatrini, Raquel
Demergasso, Cecilia
Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
title Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
title_full Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
title_fullStr Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
title_full_unstemmed Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
title_short Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
title_sort draft genome sequence of chloride-tolerant leptospirillum ferriphilum sp-cl from industrial bioleaching operations in northern chile
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4769503/
https://www.ncbi.nlm.nih.gov/pubmed/26925196
http://dx.doi.org/10.1186/s40793-016-0142-1
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