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Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies
In this study, we created four network topologies composed of living cortical neurons and compared resultant structural-functional dynamics including the nature and quality of information transmission. Each living network was composed of living cortical neurons and were created using microstamping o...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770194/ https://www.ncbi.nlm.nih.gov/pubmed/26973833 http://dx.doi.org/10.3389/fbioe.2016.00015 |
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author | Alagapan, Sankaraleengam Franca, Eric Pan, Liangbin Leondopulos, Stathis Wheeler, Bruce C. DeMarse, Thomas B. |
author_facet | Alagapan, Sankaraleengam Franca, Eric Pan, Liangbin Leondopulos, Stathis Wheeler, Bruce C. DeMarse, Thomas B. |
author_sort | Alagapan, Sankaraleengam |
collection | PubMed |
description | In this study, we created four network topologies composed of living cortical neurons and compared resultant structural-functional dynamics including the nature and quality of information transmission. Each living network was composed of living cortical neurons and were created using microstamping of adhesion promoting molecules and each was “designed” with different levels of convergence embedded within each structure. Networks were cultured over a grid of electrodes that permitted detailed measurements of neural activity at each node in the network. Of the topologies we tested, the “Random” networks in which neurons connect based on their own intrinsic properties transmitted information embedded within their spike trains with higher fidelity relative to any other topology we tested. Within our patterned topologies in which we explicitly manipulated structure, the effect of convergence on fidelity was dependent on both topology and time-scale (rate vs. temporal coding). A more detailed examination using tools from network analysis revealed that these changes in fidelity were also associated with a number of other structural properties including a node’s degree, degree–degree correlations, path length, and clustering coefficients. Whereas information transmission was apparent among nodes with few connections, the greatest transmission fidelity was achieved among the few nodes possessing the highest number of connections (high degree nodes or putative hubs). These results provide a unique view into the relationship between structure and its affect on transmission fidelity, at least within these small neural populations with defined network topology. They also highlight the potential role of tools such as microstamp printing and microelectrode array recordings to construct and record from arbitrary network topologies to provide a new direction in which to advance the study of structure–function relationships. |
format | Online Article Text |
id | pubmed-4770194 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-47701942016-03-11 Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies Alagapan, Sankaraleengam Franca, Eric Pan, Liangbin Leondopulos, Stathis Wheeler, Bruce C. DeMarse, Thomas B. Front Bioeng Biotechnol Bioengineering and Biotechnology In this study, we created four network topologies composed of living cortical neurons and compared resultant structural-functional dynamics including the nature and quality of information transmission. Each living network was composed of living cortical neurons and were created using microstamping of adhesion promoting molecules and each was “designed” with different levels of convergence embedded within each structure. Networks were cultured over a grid of electrodes that permitted detailed measurements of neural activity at each node in the network. Of the topologies we tested, the “Random” networks in which neurons connect based on their own intrinsic properties transmitted information embedded within their spike trains with higher fidelity relative to any other topology we tested. Within our patterned topologies in which we explicitly manipulated structure, the effect of convergence on fidelity was dependent on both topology and time-scale (rate vs. temporal coding). A more detailed examination using tools from network analysis revealed that these changes in fidelity were also associated with a number of other structural properties including a node’s degree, degree–degree correlations, path length, and clustering coefficients. Whereas information transmission was apparent among nodes with few connections, the greatest transmission fidelity was achieved among the few nodes possessing the highest number of connections (high degree nodes or putative hubs). These results provide a unique view into the relationship between structure and its affect on transmission fidelity, at least within these small neural populations with defined network topology. They also highlight the potential role of tools such as microstamp printing and microelectrode array recordings to construct and record from arbitrary network topologies to provide a new direction in which to advance the study of structure–function relationships. Frontiers Media S.A. 2016-02-29 /pmc/articles/PMC4770194/ /pubmed/26973833 http://dx.doi.org/10.3389/fbioe.2016.00015 Text en Copyright © 2016 Alagapan, Franca, Pan, Leondopulos, Wheeler and DeMarse. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology Alagapan, Sankaraleengam Franca, Eric Pan, Liangbin Leondopulos, Stathis Wheeler, Bruce C. DeMarse, Thomas B. Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies |
title | Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies |
title_full | Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies |
title_fullStr | Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies |
title_full_unstemmed | Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies |
title_short | Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies |
title_sort | structure, function, and propagation of information across living two, four, and eight node degree topologies |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770194/ https://www.ncbi.nlm.nih.gov/pubmed/26973833 http://dx.doi.org/10.3389/fbioe.2016.00015 |
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