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Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation

We observed single DNA molecules at different ethanol concentrations by using fluorescence microscopy. Large single DNA molecules undergo reentrant conformational transitions from elongated coil into folded globule and then into elongated coil state, accompanied by the increase of the concentration...

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Autores principales: Oda, Yuki, Sadakane, Koichiro, Yoshikawa, Yuko, Imanaka, Tadayuki, Takiguchi, Kingo, Hayashi, Masahito, Kenmotsu, Takahiro, Yoshikawa, Kenichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770436/
https://www.ncbi.nlm.nih.gov/pubmed/26891092
http://dx.doi.org/10.1002/cphc.201500988
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author Oda, Yuki
Sadakane, Koichiro
Yoshikawa, Yuko
Imanaka, Tadayuki
Takiguchi, Kingo
Hayashi, Masahito
Kenmotsu, Takahiro
Yoshikawa, Kenichi
author_facet Oda, Yuki
Sadakane, Koichiro
Yoshikawa, Yuko
Imanaka, Tadayuki
Takiguchi, Kingo
Hayashi, Masahito
Kenmotsu, Takahiro
Yoshikawa, Kenichi
author_sort Oda, Yuki
collection PubMed
description We observed single DNA molecules at different ethanol concentrations by using fluorescence microscopy. Large single DNA molecules undergo reentrant conformational transitions from elongated coil into folded globule and then into elongated coil state, accompanied by the increase of the concentration of ethanol in a low‐salt aqueous environment. The second transition from globule into the coil state occurs at around 70 % (v/v) ethanol. From circular dichroism (CD) measurements, it is confirmed that the reentrant transition of the higher order structure proceeds together with the transitions of the secondary structure from B to C and, then, from C to A in a cooperative manner. The determined mechanism of the reentrant transition is discussed in relation to the unique characteristics of solutions with higher ethanol content, for which clathrate‐like nanostructures of alcohol molecules are generated in the surrounding water.
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spelling pubmed-47704362016-04-11 Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation Oda, Yuki Sadakane, Koichiro Yoshikawa, Yuko Imanaka, Tadayuki Takiguchi, Kingo Hayashi, Masahito Kenmotsu, Takahiro Yoshikawa, Kenichi Chemphyschem Communications We observed single DNA molecules at different ethanol concentrations by using fluorescence microscopy. Large single DNA molecules undergo reentrant conformational transitions from elongated coil into folded globule and then into elongated coil state, accompanied by the increase of the concentration of ethanol in a low‐salt aqueous environment. The second transition from globule into the coil state occurs at around 70 % (v/v) ethanol. From circular dichroism (CD) measurements, it is confirmed that the reentrant transition of the higher order structure proceeds together with the transitions of the secondary structure from B to C and, then, from C to A in a cooperative manner. The determined mechanism of the reentrant transition is discussed in relation to the unique characteristics of solutions with higher ethanol content, for which clathrate‐like nanostructures of alcohol molecules are generated in the surrounding water. John Wiley and Sons Inc. 2016-01-13 2016-02-16 /pmc/articles/PMC4770436/ /pubmed/26891092 http://dx.doi.org/10.1002/cphc.201500988 Text en © 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Communications
Oda, Yuki
Sadakane, Koichiro
Yoshikawa, Yuko
Imanaka, Tadayuki
Takiguchi, Kingo
Hayashi, Masahito
Kenmotsu, Takahiro
Yoshikawa, Kenichi
Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation
title Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation
title_full Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation
title_fullStr Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation
title_full_unstemmed Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation
title_short Highly Concentrated Ethanol Solutions: Good Solvents for DNA as Revealed by Single‐Molecule Observation
title_sort highly concentrated ethanol solutions: good solvents for dna as revealed by single‐molecule observation
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770436/
https://www.ncbi.nlm.nih.gov/pubmed/26891092
http://dx.doi.org/10.1002/cphc.201500988
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