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2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis

The asymmetric unit of the title salt, C(14)H(16)N(4)O(2) (2+)·2C(9)H(5)O(6) (−), comprises half a dication, being located about a centre of inversion, and one anion, in a general position. The central C(4)N(2)O(2) group of atoms in the dication are almost planar (r.m.s. deviation = 0.009 Å), and th...

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Autores principales: Jotani, Mukesh M., Syed, Sabrina, Halim, Siti Nadiah Abdul, Tiekink, Edward R. T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770948/
https://www.ncbi.nlm.nih.gov/pubmed/26958398
http://dx.doi.org/10.1107/S2056989016000980
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author Jotani, Mukesh M.
Syed, Sabrina
Halim, Siti Nadiah Abdul
Tiekink, Edward R. T.
author_facet Jotani, Mukesh M.
Syed, Sabrina
Halim, Siti Nadiah Abdul
Tiekink, Edward R. T.
author_sort Jotani, Mukesh M.
collection PubMed
description The asymmetric unit of the title salt, C(14)H(16)N(4)O(2) (2+)·2C(9)H(5)O(6) (−), comprises half a dication, being located about a centre of inversion, and one anion, in a general position. The central C(4)N(2)O(2) group of atoms in the dication are almost planar (r.m.s. deviation = 0.009 Å), and the carbonyl groups lie in an anti disposition to enable the formation of intra­molecular amide-N—H⋯O(carbon­yl) hydrogen bonds. To a first approximation, the pyridinium and amide N atoms lie to the same side of the mol­ecule [N(py)—C—C—N(amide) torsion angle = 34.8 (2)°], and the anti pyridinium rings are approximately perpendicular to the central part of the mol­ecule [dihedral angle = 68.21 (8)°]. In the anion, one carboxyl­ate group is almost coplanar with the ring to which it is connected [C(ben)—C(ben)—C(q)—O torsion angle = 2.0 (3)°], whereas the other carboxyl­ate and carb­oxy­lic acid groups are twisted out of the plane [torsion angles = 16.4 (3) and 15.3 (3)°, respectively]. In the crystal, anions assemble into layers parallel to (10-4) via hy­droxy-O—H⋯O(carbon­yl) and charge-assisted hy­droxy-O—H⋯O(carboxyl­ate) hydrogen bonds. The dications are linked into supra­molecular tapes by amide-N—H⋯O(amide) hydrogen bonds, and thread through the voids in the anionic layers, being connected by charge-assisted pyridinium-N—O(carboxyl­ate) hydrogen bonds, so that a three-dimensional architecture ensues. An analysis of the Hirshfeld surface points to the importance of O—H⋯O hydrogen bonding in the crystal structure.
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spelling pubmed-47709482016-03-08 2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis Jotani, Mukesh M. Syed, Sabrina Halim, Siti Nadiah Abdul Tiekink, Edward R. T. Acta Crystallogr E Crystallogr Commun Research Communications The asymmetric unit of the title salt, C(14)H(16)N(4)O(2) (2+)·2C(9)H(5)O(6) (−), comprises half a dication, being located about a centre of inversion, and one anion, in a general position. The central C(4)N(2)O(2) group of atoms in the dication are almost planar (r.m.s. deviation = 0.009 Å), and the carbonyl groups lie in an anti disposition to enable the formation of intra­molecular amide-N—H⋯O(carbon­yl) hydrogen bonds. To a first approximation, the pyridinium and amide N atoms lie to the same side of the mol­ecule [N(py)—C—C—N(amide) torsion angle = 34.8 (2)°], and the anti pyridinium rings are approximately perpendicular to the central part of the mol­ecule [dihedral angle = 68.21 (8)°]. In the anion, one carboxyl­ate group is almost coplanar with the ring to which it is connected [C(ben)—C(ben)—C(q)—O torsion angle = 2.0 (3)°], whereas the other carboxyl­ate and carb­oxy­lic acid groups are twisted out of the plane [torsion angles = 16.4 (3) and 15.3 (3)°, respectively]. In the crystal, anions assemble into layers parallel to (10-4) via hy­droxy-O—H⋯O(carbon­yl) and charge-assisted hy­droxy-O—H⋯O(carboxyl­ate) hydrogen bonds. The dications are linked into supra­molecular tapes by amide-N—H⋯O(amide) hydrogen bonds, and thread through the voids in the anionic layers, being connected by charge-assisted pyridinium-N—O(carboxyl­ate) hydrogen bonds, so that a three-dimensional architecture ensues. An analysis of the Hirshfeld surface points to the importance of O—H⋯O hydrogen bonding in the crystal structure. International Union of Crystallography 2016-01-27 /pmc/articles/PMC4770948/ /pubmed/26958398 http://dx.doi.org/10.1107/S2056989016000980 Text en © Jotani et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Communications
Jotani, Mukesh M.
Syed, Sabrina
Halim, Siti Nadiah Abdul
Tiekink, Edward R. T.
2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis
title 2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis
title_full 2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis
title_fullStr 2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis
title_full_unstemmed 2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis
title_short 2-({[(Pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and Hirshfeld surface analysis
title_sort 2-({[(pyridin-1-ium-2-ylmeth­yl)carbamo­yl]form­amido}­meth­yl)pyridin-1-ium bis­(3,5-di­carb­oxy­benzoate): crystal structure and hirshfeld surface analysis
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770948/
https://www.ncbi.nlm.nih.gov/pubmed/26958398
http://dx.doi.org/10.1107/S2056989016000980
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