Cargando…

Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions

A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae) based on the nuclear ribosomal internal transcribed spacer (ITS) region and two chloroplast loci (matK and trnL-F) was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, al...

Descripción completa

Detalles Bibliográficos
Autores principales: Hu, Chao, Tian, Huaizhen, Li, Hongqing, Hu, Aiqun, Xing, Fuwu, Bhattacharjee, Avishek, Hsu, Tianchuan, Kumar, Pankaj, Chung, Shihwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4771202/
https://www.ncbi.nlm.nih.gov/pubmed/26927946
http://dx.doi.org/10.1371/journal.pone.0150366
_version_ 1782418383513321472
author Hu, Chao
Tian, Huaizhen
Li, Hongqing
Hu, Aiqun
Xing, Fuwu
Bhattacharjee, Avishek
Hsu, Tianchuan
Kumar, Pankaj
Chung, Shihwen
author_facet Hu, Chao
Tian, Huaizhen
Li, Hongqing
Hu, Aiqun
Xing, Fuwu
Bhattacharjee, Avishek
Hsu, Tianchuan
Kumar, Pankaj
Chung, Shihwen
author_sort Hu, Chao
collection PubMed
description A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae) based on the nuclear ribosomal internal transcribed spacer (ITS) region and two chloroplast loci (matK and trnL-F) was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, along with other 27 genera/48 species, using Pterostylis longifolia and Chloraea gaudichaudii as outgroups. Bayesian inference, maximum parsimony and maximum likelihood methods were used to reveal the intrageneric relationships of Goodyera and its intergeneric relationships to related genera. The results indicate that: 1) Goodyera is not monophyletic; 2) Goodyera could be divided into four sections, viz., Goodyera, Otosepalum, Reticulum and a new section; 3) sect. Reticulum can be further divided into two subsections, viz., Reticulum and Foliosum, whereas sect. Goodyera can in turn be divided into subsections Goodyera and a new subsection.
format Online
Article
Text
id pubmed-4771202
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-47712022016-03-07 Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions Hu, Chao Tian, Huaizhen Li, Hongqing Hu, Aiqun Xing, Fuwu Bhattacharjee, Avishek Hsu, Tianchuan Kumar, Pankaj Chung, Shihwen PLoS One Research Article A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae) based on the nuclear ribosomal internal transcribed spacer (ITS) region and two chloroplast loci (matK and trnL-F) was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, along with other 27 genera/48 species, using Pterostylis longifolia and Chloraea gaudichaudii as outgroups. Bayesian inference, maximum parsimony and maximum likelihood methods were used to reveal the intrageneric relationships of Goodyera and its intergeneric relationships to related genera. The results indicate that: 1) Goodyera is not monophyletic; 2) Goodyera could be divided into four sections, viz., Goodyera, Otosepalum, Reticulum and a new section; 3) sect. Reticulum can be further divided into two subsections, viz., Reticulum and Foliosum, whereas sect. Goodyera can in turn be divided into subsections Goodyera and a new subsection. Public Library of Science 2016-02-29 /pmc/articles/PMC4771202/ /pubmed/26927946 http://dx.doi.org/10.1371/journal.pone.0150366 Text en © 2016 Hu et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hu, Chao
Tian, Huaizhen
Li, Hongqing
Hu, Aiqun
Xing, Fuwu
Bhattacharjee, Avishek
Hsu, Tianchuan
Kumar, Pankaj
Chung, Shihwen
Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions
title Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions
title_full Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions
title_fullStr Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions
title_full_unstemmed Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions
title_short Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions
title_sort phylogenetic analysis of a ‘jewel orchid’ genus goodyera (orchidaceae) based on dna sequence data from nuclear and plastid regions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4771202/
https://www.ncbi.nlm.nih.gov/pubmed/26927946
http://dx.doi.org/10.1371/journal.pone.0150366
work_keys_str_mv AT huchao phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT tianhuaizhen phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT lihongqing phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT huaiqun phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT xingfuwu phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT bhattacharjeeavishek phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT hsutianchuan phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT kumarpankaj phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions
AT chungshihwen phylogeneticanalysisofajewelorchidgenusgoodyeraorchidaceaebasedondnasequencedatafromnuclearandplastidregions