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Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions
A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae) based on the nuclear ribosomal internal transcribed spacer (ITS) region and two chloroplast loci (matK and trnL-F) was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, al...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4771202/ https://www.ncbi.nlm.nih.gov/pubmed/26927946 http://dx.doi.org/10.1371/journal.pone.0150366 |
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author | Hu, Chao Tian, Huaizhen Li, Hongqing Hu, Aiqun Xing, Fuwu Bhattacharjee, Avishek Hsu, Tianchuan Kumar, Pankaj Chung, Shihwen |
author_facet | Hu, Chao Tian, Huaizhen Li, Hongqing Hu, Aiqun Xing, Fuwu Bhattacharjee, Avishek Hsu, Tianchuan Kumar, Pankaj Chung, Shihwen |
author_sort | Hu, Chao |
collection | PubMed |
description | A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae) based on the nuclear ribosomal internal transcribed spacer (ITS) region and two chloroplast loci (matK and trnL-F) was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, along with other 27 genera/48 species, using Pterostylis longifolia and Chloraea gaudichaudii as outgroups. Bayesian inference, maximum parsimony and maximum likelihood methods were used to reveal the intrageneric relationships of Goodyera and its intergeneric relationships to related genera. The results indicate that: 1) Goodyera is not monophyletic; 2) Goodyera could be divided into four sections, viz., Goodyera, Otosepalum, Reticulum and a new section; 3) sect. Reticulum can be further divided into two subsections, viz., Reticulum and Foliosum, whereas sect. Goodyera can in turn be divided into subsections Goodyera and a new subsection. |
format | Online Article Text |
id | pubmed-4771202 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-47712022016-03-07 Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions Hu, Chao Tian, Huaizhen Li, Hongqing Hu, Aiqun Xing, Fuwu Bhattacharjee, Avishek Hsu, Tianchuan Kumar, Pankaj Chung, Shihwen PLoS One Research Article A molecular phylogeny of Asiatic species of Goodyera (Orchidaceae, Cranichideae, Goodyerinae) based on the nuclear ribosomal internal transcribed spacer (ITS) region and two chloroplast loci (matK and trnL-F) was presented. Thirty-five species represented by 132 samples of Goodyera were analyzed, along with other 27 genera/48 species, using Pterostylis longifolia and Chloraea gaudichaudii as outgroups. Bayesian inference, maximum parsimony and maximum likelihood methods were used to reveal the intrageneric relationships of Goodyera and its intergeneric relationships to related genera. The results indicate that: 1) Goodyera is not monophyletic; 2) Goodyera could be divided into four sections, viz., Goodyera, Otosepalum, Reticulum and a new section; 3) sect. Reticulum can be further divided into two subsections, viz., Reticulum and Foliosum, whereas sect. Goodyera can in turn be divided into subsections Goodyera and a new subsection. Public Library of Science 2016-02-29 /pmc/articles/PMC4771202/ /pubmed/26927946 http://dx.doi.org/10.1371/journal.pone.0150366 Text en © 2016 Hu et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Hu, Chao Tian, Huaizhen Li, Hongqing Hu, Aiqun Xing, Fuwu Bhattacharjee, Avishek Hsu, Tianchuan Kumar, Pankaj Chung, Shihwen Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions |
title | Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions |
title_full | Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions |
title_fullStr | Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions |
title_full_unstemmed | Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions |
title_short | Phylogenetic Analysis of a ‘Jewel Orchid’ Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions |
title_sort | phylogenetic analysis of a ‘jewel orchid’ genus goodyera (orchidaceae) based on dna sequence data from nuclear and plastid regions |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4771202/ https://www.ncbi.nlm.nih.gov/pubmed/26927946 http://dx.doi.org/10.1371/journal.pone.0150366 |
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