Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa

Two closely related ophiostomatoid fungi, Knoxdaviesia capensis and K. proteae, inhabit the fruiting structures of certain Protea species indigenous to southern Africa. Although K. capensis occurs in several Protea hosts, K. proteae is confined to P. repens. In this study, the genomes of K. capensis...

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Autores principales: Aylward, Janneke, Steenkamp, Emma T., Dreyer, Léanne L., Roets, Francois, Wingfield, Brenda D., Wingfield, Michael J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772463/
https://www.ncbi.nlm.nih.gov/pubmed/26933475
http://dx.doi.org/10.1186/s40793-016-0139-9
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author Aylward, Janneke
Steenkamp, Emma T.
Dreyer, Léanne L.
Roets, Francois
Wingfield, Brenda D.
Wingfield, Michael J.
author_facet Aylward, Janneke
Steenkamp, Emma T.
Dreyer, Léanne L.
Roets, Francois
Wingfield, Brenda D.
Wingfield, Michael J.
author_sort Aylward, Janneke
collection PubMed
description Two closely related ophiostomatoid fungi, Knoxdaviesia capensis and K. proteae, inhabit the fruiting structures of certain Protea species indigenous to southern Africa. Although K. capensis occurs in several Protea hosts, K. proteae is confined to P. repens. In this study, the genomes of K. capensis CBS139037 and K. proteae CBS140089 are determined. The genome of K. capensis consists of 35,537,816 bp assembled into 29 scaffolds and 7940 predicted protein-coding genes of which 6192 (77.98 %) could be functionally classified. K. proteae has a similar genome size of 35,489,142 bp that is comprised of 133 scaffolds. A total of 8173 protein-coding genes were predicted for K. proteae and 6093 (74.55 %) of these have functional annotations. The GC-content of both genomes is 52.8 %. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0139-9) contains supplementary material, which is available to authorized users.
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spelling pubmed-47724632016-03-02 Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa Aylward, Janneke Steenkamp, Emma T. Dreyer, Léanne L. Roets, Francois Wingfield, Brenda D. Wingfield, Michael J. Stand Genomic Sci Short Genome Report Two closely related ophiostomatoid fungi, Knoxdaviesia capensis and K. proteae, inhabit the fruiting structures of certain Protea species indigenous to southern Africa. Although K. capensis occurs in several Protea hosts, K. proteae is confined to P. repens. In this study, the genomes of K. capensis CBS139037 and K. proteae CBS140089 are determined. The genome of K. capensis consists of 35,537,816 bp assembled into 29 scaffolds and 7940 predicted protein-coding genes of which 6192 (77.98 %) could be functionally classified. K. proteae has a similar genome size of 35,489,142 bp that is comprised of 133 scaffolds. A total of 8173 protein-coding genes were predicted for K. proteae and 6093 (74.55 %) of these have functional annotations. The GC-content of both genomes is 52.8 %. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0139-9) contains supplementary material, which is available to authorized users. BioMed Central 2016-02-29 /pmc/articles/PMC4772463/ /pubmed/26933475 http://dx.doi.org/10.1186/s40793-016-0139-9 Text en © Aylward et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Aylward, Janneke
Steenkamp, Emma T.
Dreyer, Léanne L.
Roets, Francois
Wingfield, Brenda D.
Wingfield, Michael J.
Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa
title Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa
title_full Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa
title_fullStr Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa
title_full_unstemmed Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa
title_short Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa
title_sort genome sequences of knoxdaviesia capensis and k. proteae (fungi: ascomycota) from protea trees in south africa
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772463/
https://www.ncbi.nlm.nih.gov/pubmed/26933475
http://dx.doi.org/10.1186/s40793-016-0139-9
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