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Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials

BACKGROUND: Spatial heterogeneity can have serious effects on the precision of field experimentation in plant breeding. In the present study the capacity of the honeycomb design (HD) to sample huge spatial heterogeneity was appraised. For this purpose, four trials were conducted each comprising a le...

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Autores principales: Kargiotidou, Anastasia, Vlachostergios, Dimitrios N., Tzantarmas, Constantinos, Mylonas, Ioannis, Foti, Chrysanthi, Menexes, George, Polidoros, Alexios, Tokatlidis, Ioannis S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772466/
https://www.ncbi.nlm.nih.gov/pubmed/26933651
http://dx.doi.org/10.1186/s40709-016-0039-6
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author Kargiotidou, Anastasia
Vlachostergios, Dimitrios N.
Tzantarmas, Constantinos
Mylonas, Ioannis
Foti, Chrysanthi
Menexes, George
Polidoros, Alexios
Tokatlidis, Ioannis S.
author_facet Kargiotidou, Anastasia
Vlachostergios, Dimitrios N.
Tzantarmas, Constantinos
Mylonas, Ioannis
Foti, Chrysanthi
Menexes, George
Polidoros, Alexios
Tokatlidis, Ioannis S.
author_sort Kargiotidou, Anastasia
collection PubMed
description BACKGROUND: Spatial heterogeneity can have serious effects on the precision of field experimentation in plant breeding. In the present study the capacity of the honeycomb design (HD) to sample huge spatial heterogeneity was appraised. For this purpose, four trials were conducted each comprising a lentil landrace being screened for response to viruses. RESULTS: Huge spatial heterogeneity was reflected by the abnormally high values for coefficient of variation (CV) of single-plant yields, ranging 123–162 %. At a given field area, increasing the number of simulated entries was followed by declined effectiveness of the method, on account of the larger circular block implying greater intra-block heterogeneity; a hyperbolic increasing pattern of the top to bottom entry mean gap (TBG) indicated that a number of more than 100 replicates (number of plants per entry) is the crucial threshold to avoid significant deterioration of the sampling degree. Nevertheless, the honeycomb model kept dealing with variation better than the randomized complete block (RCB) pattern, thanks to the circular shape and standardized type of block that ensure the less possible extra heterogeneity with expanding the area of the block. CONCLUSIONS: Owing to the even and systematic entry allocation, breeders do not need to be concerned with the extra spatial heterogeneity that might induce the extra surface needed to expand the size of the block when many entries are considered. Instead, they could improve accuracy of comparisons with increasing the number of replicates (circular blocks) despite the concomitant greater overall spatial heterogeneity.
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spelling pubmed-47724662016-03-02 Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials Kargiotidou, Anastasia Vlachostergios, Dimitrios N. Tzantarmas, Constantinos Mylonas, Ioannis Foti, Chrysanthi Menexes, George Polidoros, Alexios Tokatlidis, Ioannis S. J Biol Res (Thessalon) Research BACKGROUND: Spatial heterogeneity can have serious effects on the precision of field experimentation in plant breeding. In the present study the capacity of the honeycomb design (HD) to sample huge spatial heterogeneity was appraised. For this purpose, four trials were conducted each comprising a lentil landrace being screened for response to viruses. RESULTS: Huge spatial heterogeneity was reflected by the abnormally high values for coefficient of variation (CV) of single-plant yields, ranging 123–162 %. At a given field area, increasing the number of simulated entries was followed by declined effectiveness of the method, on account of the larger circular block implying greater intra-block heterogeneity; a hyperbolic increasing pattern of the top to bottom entry mean gap (TBG) indicated that a number of more than 100 replicates (number of plants per entry) is the crucial threshold to avoid significant deterioration of the sampling degree. Nevertheless, the honeycomb model kept dealing with variation better than the randomized complete block (RCB) pattern, thanks to the circular shape and standardized type of block that ensure the less possible extra heterogeneity with expanding the area of the block. CONCLUSIONS: Owing to the even and systematic entry allocation, breeders do not need to be concerned with the extra spatial heterogeneity that might induce the extra surface needed to expand the size of the block when many entries are considered. Instead, they could improve accuracy of comparisons with increasing the number of replicates (circular blocks) despite the concomitant greater overall spatial heterogeneity. BioMed Central 2016-03-01 /pmc/articles/PMC4772466/ /pubmed/26933651 http://dx.doi.org/10.1186/s40709-016-0039-6 Text en © Kargiotidou et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Kargiotidou, Anastasia
Vlachostergios, Dimitrios N.
Tzantarmas, Constantinos
Mylonas, Ioannis
Foti, Chrysanthi
Menexes, George
Polidoros, Alexios
Tokatlidis, Ioannis S.
Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials
title Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials
title_full Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials
title_fullStr Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials
title_full_unstemmed Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials
title_short Addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials
title_sort addressing huge spatial heterogeneity induced by virus infections in lentil breeding trials
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772466/
https://www.ncbi.nlm.nih.gov/pubmed/26933651
http://dx.doi.org/10.1186/s40709-016-0039-6
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