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Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
Accurate information on the distribution of existing species is crucial to assess regional biodiversity. However, data inventories are insufficient in many areas. We examine the ability of Multivariate Adaptive Regression Splines (MARS) multi-response species distribution model to overcome species’...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773094/ https://www.ncbi.nlm.nih.gov/pubmed/26930289 http://dx.doi.org/10.1371/journal.pone.0149511 |
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author | Choe, Hyeyeong Thorne, James H. Seo, Changwan |
author_facet | Choe, Hyeyeong Thorne, James H. Seo, Changwan |
author_sort | Choe, Hyeyeong |
collection | PubMed |
description | Accurate information on the distribution of existing species is crucial to assess regional biodiversity. However, data inventories are insufficient in many areas. We examine the ability of Multivariate Adaptive Regression Splines (MARS) multi-response species distribution model to overcome species’ data limitations and portray plant species distribution patterns for 199 South Korean plant species. The study models species with two or more observations, examines their contribution to national patterns of species richness, provides a sensitivity analysis of different range threshold cutoff approaches for modeling species’ ranges, and presents considerations for species modeling at fine spatial resolution. We ran MARS models for each species and tested four threshold methods to transform occurrence probabilities into presence or absence range maps. Modeled occurrence probabilities were extracted at each species’ presence points, and the mean, median, and one standard deviation (SD) calculated to define data-driven thresholds. A maximum sum of sensitivity and specificity threshold was also calculated, and the range maps from the four cutoffs were tested using independent plant survey data. The single SD values were the best threshold tested for minimizing omission errors and limiting species ranges to areas where the associated occurrence data were correctly classed. Eight individual species range maps for rare plant species were identified that are potentially affected by resampling predictor variables to fine spatial scales. We portray spatial patterns of high species richness by assessing the combined range maps from three classes of species: all species, endangered and endemic species, and range-size rarity of all species, which could be used in conservation planning for South Korea. The MARS model is promising for addressing the common problem of few species occurrence records. However, projected species ranges are highly dependent on the threshold and scale criteria, which should be assessed on a per-project basis. |
format | Online Article Text |
id | pubmed-4773094 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-47730942016-03-07 Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model Choe, Hyeyeong Thorne, James H. Seo, Changwan PLoS One Research Article Accurate information on the distribution of existing species is crucial to assess regional biodiversity. However, data inventories are insufficient in many areas. We examine the ability of Multivariate Adaptive Regression Splines (MARS) multi-response species distribution model to overcome species’ data limitations and portray plant species distribution patterns for 199 South Korean plant species. The study models species with two or more observations, examines their contribution to national patterns of species richness, provides a sensitivity analysis of different range threshold cutoff approaches for modeling species’ ranges, and presents considerations for species modeling at fine spatial resolution. We ran MARS models for each species and tested four threshold methods to transform occurrence probabilities into presence or absence range maps. Modeled occurrence probabilities were extracted at each species’ presence points, and the mean, median, and one standard deviation (SD) calculated to define data-driven thresholds. A maximum sum of sensitivity and specificity threshold was also calculated, and the range maps from the four cutoffs were tested using independent plant survey data. The single SD values were the best threshold tested for minimizing omission errors and limiting species ranges to areas where the associated occurrence data were correctly classed. Eight individual species range maps for rare plant species were identified that are potentially affected by resampling predictor variables to fine spatial scales. We portray spatial patterns of high species richness by assessing the combined range maps from three classes of species: all species, endangered and endemic species, and range-size rarity of all species, which could be used in conservation planning for South Korea. The MARS model is promising for addressing the common problem of few species occurrence records. However, projected species ranges are highly dependent on the threshold and scale criteria, which should be assessed on a per-project basis. Public Library of Science 2016-03-01 /pmc/articles/PMC4773094/ /pubmed/26930289 http://dx.doi.org/10.1371/journal.pone.0149511 Text en © 2016 Choe et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Choe, Hyeyeong Thorne, James H. Seo, Changwan Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model |
title | Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model |
title_full | Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model |
title_fullStr | Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model |
title_full_unstemmed | Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model |
title_short | Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model |
title_sort | mapping national plant biodiversity patterns in south korea with the mars species distribution model |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773094/ https://www.ncbi.nlm.nih.gov/pubmed/26930289 http://dx.doi.org/10.1371/journal.pone.0149511 |
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