Cargando…

Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model

Accurate information on the distribution of existing species is crucial to assess regional biodiversity. However, data inventories are insufficient in many areas. We examine the ability of Multivariate Adaptive Regression Splines (MARS) multi-response species distribution model to overcome species’...

Descripción completa

Detalles Bibliográficos
Autores principales: Choe, Hyeyeong, Thorne, James H., Seo, Changwan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773094/
https://www.ncbi.nlm.nih.gov/pubmed/26930289
http://dx.doi.org/10.1371/journal.pone.0149511
_version_ 1782418670970994688
author Choe, Hyeyeong
Thorne, James H.
Seo, Changwan
author_facet Choe, Hyeyeong
Thorne, James H.
Seo, Changwan
author_sort Choe, Hyeyeong
collection PubMed
description Accurate information on the distribution of existing species is crucial to assess regional biodiversity. However, data inventories are insufficient in many areas. We examine the ability of Multivariate Adaptive Regression Splines (MARS) multi-response species distribution model to overcome species’ data limitations and portray plant species distribution patterns for 199 South Korean plant species. The study models species with two or more observations, examines their contribution to national patterns of species richness, provides a sensitivity analysis of different range threshold cutoff approaches for modeling species’ ranges, and presents considerations for species modeling at fine spatial resolution. We ran MARS models for each species and tested four threshold methods to transform occurrence probabilities into presence or absence range maps. Modeled occurrence probabilities were extracted at each species’ presence points, and the mean, median, and one standard deviation (SD) calculated to define data-driven thresholds. A maximum sum of sensitivity and specificity threshold was also calculated, and the range maps from the four cutoffs were tested using independent plant survey data. The single SD values were the best threshold tested for minimizing omission errors and limiting species ranges to areas where the associated occurrence data were correctly classed. Eight individual species range maps for rare plant species were identified that are potentially affected by resampling predictor variables to fine spatial scales. We portray spatial patterns of high species richness by assessing the combined range maps from three classes of species: all species, endangered and endemic species, and range-size rarity of all species, which could be used in conservation planning for South Korea. The MARS model is promising for addressing the common problem of few species occurrence records. However, projected species ranges are highly dependent on the threshold and scale criteria, which should be assessed on a per-project basis.
format Online
Article
Text
id pubmed-4773094
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-47730942016-03-07 Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model Choe, Hyeyeong Thorne, James H. Seo, Changwan PLoS One Research Article Accurate information on the distribution of existing species is crucial to assess regional biodiversity. However, data inventories are insufficient in many areas. We examine the ability of Multivariate Adaptive Regression Splines (MARS) multi-response species distribution model to overcome species’ data limitations and portray plant species distribution patterns for 199 South Korean plant species. The study models species with two or more observations, examines their contribution to national patterns of species richness, provides a sensitivity analysis of different range threshold cutoff approaches for modeling species’ ranges, and presents considerations for species modeling at fine spatial resolution. We ran MARS models for each species and tested four threshold methods to transform occurrence probabilities into presence or absence range maps. Modeled occurrence probabilities were extracted at each species’ presence points, and the mean, median, and one standard deviation (SD) calculated to define data-driven thresholds. A maximum sum of sensitivity and specificity threshold was also calculated, and the range maps from the four cutoffs were tested using independent plant survey data. The single SD values were the best threshold tested for minimizing omission errors and limiting species ranges to areas where the associated occurrence data were correctly classed. Eight individual species range maps for rare plant species were identified that are potentially affected by resampling predictor variables to fine spatial scales. We portray spatial patterns of high species richness by assessing the combined range maps from three classes of species: all species, endangered and endemic species, and range-size rarity of all species, which could be used in conservation planning for South Korea. The MARS model is promising for addressing the common problem of few species occurrence records. However, projected species ranges are highly dependent on the threshold and scale criteria, which should be assessed on a per-project basis. Public Library of Science 2016-03-01 /pmc/articles/PMC4773094/ /pubmed/26930289 http://dx.doi.org/10.1371/journal.pone.0149511 Text en © 2016 Choe et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Choe, Hyeyeong
Thorne, James H.
Seo, Changwan
Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
title Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
title_full Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
title_fullStr Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
title_full_unstemmed Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
title_short Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
title_sort mapping national plant biodiversity patterns in south korea with the mars species distribution model
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773094/
https://www.ncbi.nlm.nih.gov/pubmed/26930289
http://dx.doi.org/10.1371/journal.pone.0149511
work_keys_str_mv AT choehyeyeong mappingnationalplantbiodiversitypatternsinsouthkoreawiththemarsspeciesdistributionmodel
AT thornejamesh mappingnationalplantbiodiversitypatternsinsouthkoreawiththemarsspeciesdistributionmodel
AT seochangwan mappingnationalplantbiodiversitypatternsinsouthkoreawiththemarsspeciesdistributionmodel