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Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards
BACKGROUND: The Biomedical Research Integrated Domain Group (BRIDG) model is a formal domain analysis model for protocol-driven biomedical research, and serves as a semantic foundation for application and message development in the standards developing organizations (SDOs). The increasing sophistica...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778326/ https://www.ncbi.nlm.nih.gov/pubmed/26949508 http://dx.doi.org/10.1186/s13326-016-0053-5 |
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author | Jiang, Guoqian Evans, Julie Endle, Cory M. Solbrig, Harold R. Chute, Christopher G. |
author_facet | Jiang, Guoqian Evans, Julie Endle, Cory M. Solbrig, Harold R. Chute, Christopher G. |
author_sort | Jiang, Guoqian |
collection | PubMed |
description | BACKGROUND: The Biomedical Research Integrated Domain Group (BRIDG) model is a formal domain analysis model for protocol-driven biomedical research, and serves as a semantic foundation for application and message development in the standards developing organizations (SDOs). The increasing sophistication and complexity of the BRIDG model requires new approaches to the management and utilization of the underlying semantics to harmonize domain-specific standards. The objective of this study is to develop and evaluate a Semantic Web-based approach that integrates the BRIDG model with ISO 21090 data types to generate domain-specific templates to support clinical study metadata standards development. METHODS: We developed a template generation and visualization system based on an open source Resource Description Framework (RDF) store backend, a SmartGWT-based web user interface, and a “mind map” based tool for the visualization of generated domain-specific templates. We also developed a RESTful Web Service informed by the Clinical Information Modeling Initiative (CIMI) reference model for access to the generated domain-specific templates. RESULTS: A preliminary usability study is performed and all reviewers (n = 3) had very positive responses for the evaluation questions in terms of the usability and the capability of meeting the system requirements (with the average score of 4.6). CONCLUSIONS: Semantic Web technologies provide a scalable infrastructure and have great potential to enable computable semantic interoperability of models in the intersection of health care and clinical research. |
format | Online Article Text |
id | pubmed-4778326 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-47783262016-03-05 Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards Jiang, Guoqian Evans, Julie Endle, Cory M. Solbrig, Harold R. Chute, Christopher G. J Biomed Semantics Research BACKGROUND: The Biomedical Research Integrated Domain Group (BRIDG) model is a formal domain analysis model for protocol-driven biomedical research, and serves as a semantic foundation for application and message development in the standards developing organizations (SDOs). The increasing sophistication and complexity of the BRIDG model requires new approaches to the management and utilization of the underlying semantics to harmonize domain-specific standards. The objective of this study is to develop and evaluate a Semantic Web-based approach that integrates the BRIDG model with ISO 21090 data types to generate domain-specific templates to support clinical study metadata standards development. METHODS: We developed a template generation and visualization system based on an open source Resource Description Framework (RDF) store backend, a SmartGWT-based web user interface, and a “mind map” based tool for the visualization of generated domain-specific templates. We also developed a RESTful Web Service informed by the Clinical Information Modeling Initiative (CIMI) reference model for access to the generated domain-specific templates. RESULTS: A preliminary usability study is performed and all reviewers (n = 3) had very positive responses for the evaluation questions in terms of the usability and the capability of meeting the system requirements (with the average score of 4.6). CONCLUSIONS: Semantic Web technologies provide a scalable infrastructure and have great potential to enable computable semantic interoperability of models in the intersection of health care and clinical research. BioMed Central 2016-03-03 /pmc/articles/PMC4778326/ /pubmed/26949508 http://dx.doi.org/10.1186/s13326-016-0053-5 Text en © Jiang et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Jiang, Guoqian Evans, Julie Endle, Cory M. Solbrig, Harold R. Chute, Christopher G. Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards |
title | Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards |
title_full | Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards |
title_fullStr | Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards |
title_full_unstemmed | Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards |
title_short | Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards |
title_sort | using semantic web technologies for the generation of domain-specific templates to support clinical study metadata standards |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778326/ https://www.ncbi.nlm.nih.gov/pubmed/26949508 http://dx.doi.org/10.1186/s13326-016-0053-5 |
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