Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA

Pythium insidiosum ATCC 200269 strain CDC-B5653, an isolate from necrotizing lesions on the mouth and eye of a 2-year-old boy in Memphis, Tennessee, USA, was sequenced using a combination of Illumina MiSeq (300 bp paired-end, 14 millions reads) and PacBio (10  Kb fragment library, 356,001 reads). Th...

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Autores principales: Ascunce, Marina S., Huguet-Tapia, Jose C., Braun, Edward L., Ortiz-Urquiza, Almudena, Keyhani, Nemat O., Goss, Erica M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778604/
https://www.ncbi.nlm.nih.gov/pubmed/26981361
http://dx.doi.org/10.1016/j.gdata.2015.11.019
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author Ascunce, Marina S.
Huguet-Tapia, Jose C.
Braun, Edward L.
Ortiz-Urquiza, Almudena
Keyhani, Nemat O.
Goss, Erica M.
author_facet Ascunce, Marina S.
Huguet-Tapia, Jose C.
Braun, Edward L.
Ortiz-Urquiza, Almudena
Keyhani, Nemat O.
Goss, Erica M.
author_sort Ascunce, Marina S.
collection PubMed
description Pythium insidiosum ATCC 200269 strain CDC-B5653, an isolate from necrotizing lesions on the mouth and eye of a 2-year-old boy in Memphis, Tennessee, USA, was sequenced using a combination of Illumina MiSeq (300 bp paired-end, 14 millions reads) and PacBio (10  Kb fragment library, 356,001 reads). The sequencing data were assembled using SPAdes version 3.1.0, yielding a total genome size of 45.6 Mb contained in 8992 contigs, N(50) of 13 Kb, 57% G + C content, and 17,867 putative protein-coding genes. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession JRHR00000000.
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spelling pubmed-47786042016-03-15 Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA Ascunce, Marina S. Huguet-Tapia, Jose C. Braun, Edward L. Ortiz-Urquiza, Almudena Keyhani, Nemat O. Goss, Erica M. Genom Data Data in Brief Pythium insidiosum ATCC 200269 strain CDC-B5653, an isolate from necrotizing lesions on the mouth and eye of a 2-year-old boy in Memphis, Tennessee, USA, was sequenced using a combination of Illumina MiSeq (300 bp paired-end, 14 millions reads) and PacBio (10  Kb fragment library, 356,001 reads). The sequencing data were assembled using SPAdes version 3.1.0, yielding a total genome size of 45.6 Mb contained in 8992 contigs, N(50) of 13 Kb, 57% G + C content, and 17,867 putative protein-coding genes. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession JRHR00000000. Elsevier 2015-11-23 /pmc/articles/PMC4778604/ /pubmed/26981361 http://dx.doi.org/10.1016/j.gdata.2015.11.019 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data in Brief
Ascunce, Marina S.
Huguet-Tapia, Jose C.
Braun, Edward L.
Ortiz-Urquiza, Almudena
Keyhani, Nemat O.
Goss, Erica M.
Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA
title Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA
title_full Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA
title_fullStr Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA
title_full_unstemmed Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA
title_short Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA
title_sort whole genome sequence of the emerging oomycete pathogen pythium insidiosum strain cdc-b5653 isolated from an infected human in the usa
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778604/
https://www.ncbi.nlm.nih.gov/pubmed/26981361
http://dx.doi.org/10.1016/j.gdata.2015.11.019
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