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Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing
Insights about the distribution of the microbial community prove to be the major goal of understanding microbial ecology which remains to be fully deciphered. Hot springs being hub for the thermophilic microbiota attract the attention of the microbiologists. Deulajhari hot spring cluster is located...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778618/ https://www.ncbi.nlm.nih.gov/pubmed/26981376 http://dx.doi.org/10.1016/j.gdata.2015.12.004 |
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author | Singh, Archana Subudhi, Enketeswara |
author_facet | Singh, Archana Subudhi, Enketeswara |
author_sort | Singh, Archana |
collection | PubMed |
description | Insights about the distribution of the microbial community prove to be the major goal of understanding microbial ecology which remains to be fully deciphered. Hot springs being hub for the thermophilic microbiota attract the attention of the microbiologists. Deulajhari hot spring cluster is located in the Angul district of Odisha. Covered within a wooded area, Deulajhari hot spring is also fed by the plant litter resulting in a relatively high amount of total organic content (TOC). For the first time, Illumina sequencing based biodiversity analysis of microbial composition is studied through amplicon metagenome sequencing of 16s rRNA targeting V3‐V4 region using metagenomic DNA from the hot spring sediment. Over 28 phyla were detected through the amplicon metagenome sequencing of which the most dominating phyla at the existing physiochemical parameters like; temperature 69 °C, pH 8.09, electroconductivity 0.025 dSm(− 1) and total organic carbon 0.356%, were Proteobacteria (88.12%), Bacteriodetes (10.76%), Firmicutes (0.35%), Spirochetes (0.18%) and chloroflexi (0.11%). Approximately 713 species were observed at the above physiochemical parameters. The analysis of the metagenome provides the quantitative insights into microbial populations based on the sequence data in Deulajhari hot spring. Metagenome sequence is deposited to SRA database which is available at NCBI with accession no. SRX1459736. |
format | Online Article Text |
id | pubmed-4778618 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-47786182016-03-15 Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing Singh, Archana Subudhi, Enketeswara Genom Data Data in Brief Insights about the distribution of the microbial community prove to be the major goal of understanding microbial ecology which remains to be fully deciphered. Hot springs being hub for the thermophilic microbiota attract the attention of the microbiologists. Deulajhari hot spring cluster is located in the Angul district of Odisha. Covered within a wooded area, Deulajhari hot spring is also fed by the plant litter resulting in a relatively high amount of total organic content (TOC). For the first time, Illumina sequencing based biodiversity analysis of microbial composition is studied through amplicon metagenome sequencing of 16s rRNA targeting V3‐V4 region using metagenomic DNA from the hot spring sediment. Over 28 phyla were detected through the amplicon metagenome sequencing of which the most dominating phyla at the existing physiochemical parameters like; temperature 69 °C, pH 8.09, electroconductivity 0.025 dSm(− 1) and total organic carbon 0.356%, were Proteobacteria (88.12%), Bacteriodetes (10.76%), Firmicutes (0.35%), Spirochetes (0.18%) and chloroflexi (0.11%). Approximately 713 species were observed at the above physiochemical parameters. The analysis of the metagenome provides the quantitative insights into microbial populations based on the sequence data in Deulajhari hot spring. Metagenome sequence is deposited to SRA database which is available at NCBI with accession no. SRX1459736. Elsevier 2015-12-18 /pmc/articles/PMC4778618/ /pubmed/26981376 http://dx.doi.org/10.1016/j.gdata.2015.12.004 Text en © 2015 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Singh, Archana Subudhi, Enketeswara Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing |
title | Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing |
title_full | Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing |
title_fullStr | Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing |
title_full_unstemmed | Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing |
title_short | Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing |
title_sort | structural insights of microbial community of deulajhari (india) hot spring using 16s-rrna based metagenomic sequencing |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778618/ https://www.ncbi.nlm.nih.gov/pubmed/26981376 http://dx.doi.org/10.1016/j.gdata.2015.12.004 |
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