Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array

Recently, for copy number variation (CNV) analysis, bovine researchers have focused mainly on the use of genome-wide SNP genotyping arrays. One of the highest densities commercially available SNPchips for cattle is the Affymetrix axiom genome-wide Bos 1, which assays 648,315 informative SNPs across...

Descripción completa

Detalles Bibliográficos
Autores principales: Salomon-Torres, Ricardo, Villa-Angulo, Rafael, Villa-Angulo, Carlos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778655/
https://www.ncbi.nlm.nih.gov/pubmed/26981375
http://dx.doi.org/10.1016/j.gdata.2015.12.007
_version_ 1782419506137661440
author Salomon-Torres, Ricardo
Villa-Angulo, Rafael
Villa-Angulo, Carlos
author_facet Salomon-Torres, Ricardo
Villa-Angulo, Rafael
Villa-Angulo, Carlos
author_sort Salomon-Torres, Ricardo
collection PubMed
description Recently, for copy number variation (CNV) analysis, bovine researchers have focused mainly on the use of genome-wide SNP genotyping arrays. One of the highest densities commercially available SNPchips for cattle is the Affymetrix axiom genome-wide Bos 1, which assays 648,315 informative SNPs across the whole bovine genome. Here, we describe the microarray data, quality controls and validation implemented in a study published in Genetics and Molecular Research Journal in 2015 [1]. The microarray raw data has been deposited into Gene Expression Omnibus under accession #GSE54813.
format Online
Article
Text
id pubmed-4778655
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-47786552016-03-15 Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array Salomon-Torres, Ricardo Villa-Angulo, Rafael Villa-Angulo, Carlos Genom Data Data in Brief Recently, for copy number variation (CNV) analysis, bovine researchers have focused mainly on the use of genome-wide SNP genotyping arrays. One of the highest densities commercially available SNPchips for cattle is the Affymetrix axiom genome-wide Bos 1, which assays 648,315 informative SNPs across the whole bovine genome. Here, we describe the microarray data, quality controls and validation implemented in a study published in Genetics and Molecular Research Journal in 2015 [1]. The microarray raw data has been deposited into Gene Expression Omnibus under accession #GSE54813. Elsevier 2015-12-17 /pmc/articles/PMC4778655/ /pubmed/26981375 http://dx.doi.org/10.1016/j.gdata.2015.12.007 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Salomon-Torres, Ricardo
Villa-Angulo, Rafael
Villa-Angulo, Carlos
Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array
title Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array
title_full Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array
title_fullStr Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array
title_full_unstemmed Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array
title_short Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array
title_sort analysis of copy number variations in mexican holstein cattle using axiom genome-wide bos 1 array
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778655/
https://www.ncbi.nlm.nih.gov/pubmed/26981375
http://dx.doi.org/10.1016/j.gdata.2015.12.007
work_keys_str_mv AT salomontorresricardo analysisofcopynumbervariationsinmexicanholsteincattleusingaxiomgenomewidebos1array
AT villaangulorafael analysisofcopynumbervariationsinmexicanholsteincattleusingaxiomgenomewidebos1array
AT villaangulocarlos analysisofcopynumbervariationsinmexicanholsteincattleusingaxiomgenomewidebos1array

Ejemplares similares