Cargando…

Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food

Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture for thousands of years, is made from vegetables by fermentation. In this work, microorganism community of the fermented serofluid dish was investigated by the culture-independent method. The metagenomic data in this...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Peng, Zhao, Yang, Wu, Zhengrong, Liu, Ronghui, Xu, Ruixiang, Yan, Lei, Li, Hongyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778662/
https://www.ncbi.nlm.nih.gov/pubmed/26981389
http://dx.doi.org/10.1016/j.gdata.2015.12.028
_version_ 1782419507800702976
author Chen, Peng
Zhao, Yang
Wu, Zhengrong
Liu, Ronghui
Xu, Ruixiang
Yan, Lei
Li, Hongyu
author_facet Chen, Peng
Zhao, Yang
Wu, Zhengrong
Liu, Ronghui
Xu, Ruixiang
Yan, Lei
Li, Hongyu
author_sort Chen, Peng
collection PubMed
description Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture for thousands of years, is made from vegetables by fermentation. In this work, microorganism community of the fermented serofluid dish was investigated by the culture-independent method. The metagenomic data in this article contains the sequences of fungal internal transcribed spacer (ITS) regions of rRNA genes from 12 different serofluid dish samples. The metagenome comprised of 50,865 average raw reads with an average of 8,958,220 bp and G + C content is 45.62%. This is the first report on metagenomic data of fungal ITS from serofluid dish employing Illumina platform to profile the fungal communities of this little known fermented food from Gansu Province, China. The Metagenomic data of fungal internal transcribed spacer can be accessed at NCBI, SRA database accession no. SRP067411.
format Online
Article
Text
id pubmed-4778662
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-47786622016-03-15 Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food Chen, Peng Zhao, Yang Wu, Zhengrong Liu, Ronghui Xu, Ruixiang Yan, Lei Li, Hongyu Genom Data Lab Resource Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture for thousands of years, is made from vegetables by fermentation. In this work, microorganism community of the fermented serofluid dish was investigated by the culture-independent method. The metagenomic data in this article contains the sequences of fungal internal transcribed spacer (ITS) regions of rRNA genes from 12 different serofluid dish samples. The metagenome comprised of 50,865 average raw reads with an average of 8,958,220 bp and G + C content is 45.62%. This is the first report on metagenomic data of fungal ITS from serofluid dish employing Illumina platform to profile the fungal communities of this little known fermented food from Gansu Province, China. The Metagenomic data of fungal internal transcribed spacer can be accessed at NCBI, SRA database accession no. SRP067411. Elsevier 2015-12-31 /pmc/articles/PMC4778662/ /pubmed/26981389 http://dx.doi.org/10.1016/j.gdata.2015.12.028 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Lab Resource
Chen, Peng
Zhao, Yang
Wu, Zhengrong
Liu, Ronghui
Xu, Ruixiang
Yan, Lei
Li, Hongyu
Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
title Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
title_full Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
title_fullStr Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
title_full_unstemmed Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
title_short Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
title_sort metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional chinese fermented food
topic Lab Resource
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778662/
https://www.ncbi.nlm.nih.gov/pubmed/26981389
http://dx.doi.org/10.1016/j.gdata.2015.12.028
work_keys_str_mv AT chenpeng metagenomicdataoffungalinternaltranscribedspacerfromserofluiddishatraditionalchinesefermentedfood
AT zhaoyang metagenomicdataoffungalinternaltranscribedspacerfromserofluiddishatraditionalchinesefermentedfood
AT wuzhengrong metagenomicdataoffungalinternaltranscribedspacerfromserofluiddishatraditionalchinesefermentedfood
AT liuronghui metagenomicdataoffungalinternaltranscribedspacerfromserofluiddishatraditionalchinesefermentedfood
AT xuruixiang metagenomicdataoffungalinternaltranscribedspacerfromserofluiddishatraditionalchinesefermentedfood
AT yanlei metagenomicdataoffungalinternaltranscribedspacerfromserofluiddishatraditionalchinesefermentedfood
AT lihongyu metagenomicdataoffungalinternaltranscribedspacerfromserofluiddishatraditionalchinesefermentedfood