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Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture for thousands of years, is made from vegetables by fermentation. In this work, microorganism community of the fermented serofluid dish was investigated by the culture-independent method. The metagenomic data in this...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778662/ https://www.ncbi.nlm.nih.gov/pubmed/26981389 http://dx.doi.org/10.1016/j.gdata.2015.12.028 |
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author | Chen, Peng Zhao, Yang Wu, Zhengrong Liu, Ronghui Xu, Ruixiang Yan, Lei Li, Hongyu |
author_facet | Chen, Peng Zhao, Yang Wu, Zhengrong Liu, Ronghui Xu, Ruixiang Yan, Lei Li, Hongyu |
author_sort | Chen, Peng |
collection | PubMed |
description | Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture for thousands of years, is made from vegetables by fermentation. In this work, microorganism community of the fermented serofluid dish was investigated by the culture-independent method. The metagenomic data in this article contains the sequences of fungal internal transcribed spacer (ITS) regions of rRNA genes from 12 different serofluid dish samples. The metagenome comprised of 50,865 average raw reads with an average of 8,958,220 bp and G + C content is 45.62%. This is the first report on metagenomic data of fungal ITS from serofluid dish employing Illumina platform to profile the fungal communities of this little known fermented food from Gansu Province, China. The Metagenomic data of fungal internal transcribed spacer can be accessed at NCBI, SRA database accession no. SRP067411. |
format | Online Article Text |
id | pubmed-4778662 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-47786622016-03-15 Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food Chen, Peng Zhao, Yang Wu, Zhengrong Liu, Ronghui Xu, Ruixiang Yan, Lei Li, Hongyu Genom Data Lab Resource Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture for thousands of years, is made from vegetables by fermentation. In this work, microorganism community of the fermented serofluid dish was investigated by the culture-independent method. The metagenomic data in this article contains the sequences of fungal internal transcribed spacer (ITS) regions of rRNA genes from 12 different serofluid dish samples. The metagenome comprised of 50,865 average raw reads with an average of 8,958,220 bp and G + C content is 45.62%. This is the first report on metagenomic data of fungal ITS from serofluid dish employing Illumina platform to profile the fungal communities of this little known fermented food from Gansu Province, China. The Metagenomic data of fungal internal transcribed spacer can be accessed at NCBI, SRA database accession no. SRP067411. Elsevier 2015-12-31 /pmc/articles/PMC4778662/ /pubmed/26981389 http://dx.doi.org/10.1016/j.gdata.2015.12.028 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Lab Resource Chen, Peng Zhao, Yang Wu, Zhengrong Liu, Ronghui Xu, Ruixiang Yan, Lei Li, Hongyu Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food |
title | Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food |
title_full | Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food |
title_fullStr | Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food |
title_full_unstemmed | Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food |
title_short | Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food |
title_sort | metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional chinese fermented food |
topic | Lab Resource |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778662/ https://www.ncbi.nlm.nih.gov/pubmed/26981389 http://dx.doi.org/10.1016/j.gdata.2015.12.028 |
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