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Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico

The genus Haloarcula belongs to the family Halobacteriaceae which currently has 10 valid species. Here we report the draft genome sequence of strain SL3, a new species within this genus, isolated from the Solar Salterns of Cabo Rojo, Puerto Rico. Genome assembly performed using NGEN Assembler result...

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Autores principales: Sánchez-Nieves, Rubén, Facciotti, Marc, Saavedra-Collado, Sofía, Dávila-Santiago, Lizbeth, Rodríguez-Carrero, Roy, Montalvo-Rodríguez, Rafael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778667/
https://www.ncbi.nlm.nih.gov/pubmed/26981428
http://dx.doi.org/10.1016/j.gdata.2016.02.005
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author Sánchez-Nieves, Rubén
Facciotti, Marc
Saavedra-Collado, Sofía
Dávila-Santiago, Lizbeth
Rodríguez-Carrero, Roy
Montalvo-Rodríguez, Rafael
author_facet Sánchez-Nieves, Rubén
Facciotti, Marc
Saavedra-Collado, Sofía
Dávila-Santiago, Lizbeth
Rodríguez-Carrero, Roy
Montalvo-Rodríguez, Rafael
author_sort Sánchez-Nieves, Rubén
collection PubMed
description The genus Haloarcula belongs to the family Halobacteriaceae which currently has 10 valid species. Here we report the draft genome sequence of strain SL3, a new species within this genus, isolated from the Solar Salterns of Cabo Rojo, Puerto Rico. Genome assembly performed using NGEN Assembler resulted in 18 contigs (N50 = 601,911 bp), the largest of which contains 1,023,775 bp. The genome consists of 3.97 MB and has a GC content of 61.97%. Like all species of Haloarcula, the genome encodes heterogeneous copies of the small subunit ribosomal RNA. In addition, the genome includes 6 rRNAs, 48 tRNAs, and 3797 protein coding sequences. Several carbohydrate-active enzymes genes were found, as well as enzymes involved in the dihydroxyacetone processing pathway which are not found in other Haloarcula species. The NCBI accession number for this genome is LIUF00000000 and the strain deposit number is CECT9001.
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spelling pubmed-47786672016-03-15 Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico Sánchez-Nieves, Rubén Facciotti, Marc Saavedra-Collado, Sofía Dávila-Santiago, Lizbeth Rodríguez-Carrero, Roy Montalvo-Rodríguez, Rafael Genom Data Data in Brief The genus Haloarcula belongs to the family Halobacteriaceae which currently has 10 valid species. Here we report the draft genome sequence of strain SL3, a new species within this genus, isolated from the Solar Salterns of Cabo Rojo, Puerto Rico. Genome assembly performed using NGEN Assembler resulted in 18 contigs (N50 = 601,911 bp), the largest of which contains 1,023,775 bp. The genome consists of 3.97 MB and has a GC content of 61.97%. Like all species of Haloarcula, the genome encodes heterogeneous copies of the small subunit ribosomal RNA. In addition, the genome includes 6 rRNAs, 48 tRNAs, and 3797 protein coding sequences. Several carbohydrate-active enzymes genes were found, as well as enzymes involved in the dihydroxyacetone processing pathway which are not found in other Haloarcula species. The NCBI accession number for this genome is LIUF00000000 and the strain deposit number is CECT9001. Elsevier 2016-02-06 /pmc/articles/PMC4778667/ /pubmed/26981428 http://dx.doi.org/10.1016/j.gdata.2016.02.005 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Sánchez-Nieves, Rubén
Facciotti, Marc
Saavedra-Collado, Sofía
Dávila-Santiago, Lizbeth
Rodríguez-Carrero, Roy
Montalvo-Rodríguez, Rafael
Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico
title Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico
title_full Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico
title_fullStr Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico
title_full_unstemmed Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico
title_short Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico
title_sort draft genome of haloarcula rubripromontorii strain sl3, a novel halophilic archaeon isolated from the solar salterns of cabo rojo, puerto rico
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778667/
https://www.ncbi.nlm.nih.gov/pubmed/26981428
http://dx.doi.org/10.1016/j.gdata.2016.02.005
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