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Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico
The genus Haloarcula belongs to the family Halobacteriaceae which currently has 10 valid species. Here we report the draft genome sequence of strain SL3, a new species within this genus, isolated from the Solar Salterns of Cabo Rojo, Puerto Rico. Genome assembly performed using NGEN Assembler result...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778667/ https://www.ncbi.nlm.nih.gov/pubmed/26981428 http://dx.doi.org/10.1016/j.gdata.2016.02.005 |
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author | Sánchez-Nieves, Rubén Facciotti, Marc Saavedra-Collado, Sofía Dávila-Santiago, Lizbeth Rodríguez-Carrero, Roy Montalvo-Rodríguez, Rafael |
author_facet | Sánchez-Nieves, Rubén Facciotti, Marc Saavedra-Collado, Sofía Dávila-Santiago, Lizbeth Rodríguez-Carrero, Roy Montalvo-Rodríguez, Rafael |
author_sort | Sánchez-Nieves, Rubén |
collection | PubMed |
description | The genus Haloarcula belongs to the family Halobacteriaceae which currently has 10 valid species. Here we report the draft genome sequence of strain SL3, a new species within this genus, isolated from the Solar Salterns of Cabo Rojo, Puerto Rico. Genome assembly performed using NGEN Assembler resulted in 18 contigs (N50 = 601,911 bp), the largest of which contains 1,023,775 bp. The genome consists of 3.97 MB and has a GC content of 61.97%. Like all species of Haloarcula, the genome encodes heterogeneous copies of the small subunit ribosomal RNA. In addition, the genome includes 6 rRNAs, 48 tRNAs, and 3797 protein coding sequences. Several carbohydrate-active enzymes genes were found, as well as enzymes involved in the dihydroxyacetone processing pathway which are not found in other Haloarcula species. The NCBI accession number for this genome is LIUF00000000 and the strain deposit number is CECT9001. |
format | Online Article Text |
id | pubmed-4778667 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-47786672016-03-15 Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico Sánchez-Nieves, Rubén Facciotti, Marc Saavedra-Collado, Sofía Dávila-Santiago, Lizbeth Rodríguez-Carrero, Roy Montalvo-Rodríguez, Rafael Genom Data Data in Brief The genus Haloarcula belongs to the family Halobacteriaceae which currently has 10 valid species. Here we report the draft genome sequence of strain SL3, a new species within this genus, isolated from the Solar Salterns of Cabo Rojo, Puerto Rico. Genome assembly performed using NGEN Assembler resulted in 18 contigs (N50 = 601,911 bp), the largest of which contains 1,023,775 bp. The genome consists of 3.97 MB and has a GC content of 61.97%. Like all species of Haloarcula, the genome encodes heterogeneous copies of the small subunit ribosomal RNA. In addition, the genome includes 6 rRNAs, 48 tRNAs, and 3797 protein coding sequences. Several carbohydrate-active enzymes genes were found, as well as enzymes involved in the dihydroxyacetone processing pathway which are not found in other Haloarcula species. The NCBI accession number for this genome is LIUF00000000 and the strain deposit number is CECT9001. Elsevier 2016-02-06 /pmc/articles/PMC4778667/ /pubmed/26981428 http://dx.doi.org/10.1016/j.gdata.2016.02.005 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Sánchez-Nieves, Rubén Facciotti, Marc Saavedra-Collado, Sofía Dávila-Santiago, Lizbeth Rodríguez-Carrero, Roy Montalvo-Rodríguez, Rafael Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico |
title | Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico |
title_full | Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico |
title_fullStr | Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico |
title_full_unstemmed | Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico |
title_short | Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico |
title_sort | draft genome of haloarcula rubripromontorii strain sl3, a novel halophilic archaeon isolated from the solar salterns of cabo rojo, puerto rico |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778667/ https://www.ncbi.nlm.nih.gov/pubmed/26981428 http://dx.doi.org/10.1016/j.gdata.2016.02.005 |
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