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Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae)
Both commercial and experimental genotypes of kiwifruit (Actinidia spp.) exhibit large differences in response to insect pests. An understanding of the vine's physiological response to insect feeding and its genetic basis will be important in assisting the development of varieties with acceptab...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778680/ https://www.ncbi.nlm.nih.gov/pubmed/26981426 http://dx.doi.org/10.1016/j.gdata.2016.01.016 |
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author | Hill, M. Garry Wurms, Kirstin V. Davy, Marcus W. Gould, Elaine Allan, Andrew Mauchline, Nicola A. Luo, Zhiwei Ah Chee, Annette Stannard, Kate Storey, Roy D. Rikkerink, Erik H. |
author_facet | Hill, M. Garry Wurms, Kirstin V. Davy, Marcus W. Gould, Elaine Allan, Andrew Mauchline, Nicola A. Luo, Zhiwei Ah Chee, Annette Stannard, Kate Storey, Roy D. Rikkerink, Erik H. |
author_sort | Hill, M. Garry |
collection | PubMed |
description | Both commercial and experimental genotypes of kiwifruit (Actinidia spp.) exhibit large differences in response to insect pests. An understanding of the vine's physiological response to insect feeding and its genetic basis will be important in assisting the development of varieties with acceptable levels of pest resistance. This experiment describes transcriptome changes observed in the bark of kiwifruit 2 and 7 days after the commencement of feeding by the armored scale insect pest, Hemiberlesia lataniae. Using a cDNA microarray consisting of 17,512 unigenes, we measured transcriptome changes and analyzed these into functional ontology categories using MapMan. Results are available in the GEO database GSE73922 and are described fully in Ref. Hill et al. (2015) [1]. After 7 days, transcripts associated with photosynthesis were down-regulated and secondary metabolism was up-regulated. Differential expression of transcripts associated with stress response was consistent with a defense response involving both effector and herbivore-triggered immunities, with predominant involvement of the salicylic acid phytohormonal pathway. This hypothesis was supported by the results of two laboratory experiments. The methods described here could be further adapted and applied to the study of plant responses to a wide range of sessile sucking pests. |
format | Online Article Text |
id | pubmed-4778680 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-47786802016-03-15 Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae) Hill, M. Garry Wurms, Kirstin V. Davy, Marcus W. Gould, Elaine Allan, Andrew Mauchline, Nicola A. Luo, Zhiwei Ah Chee, Annette Stannard, Kate Storey, Roy D. Rikkerink, Erik H. Genom Data Data in Brief Both commercial and experimental genotypes of kiwifruit (Actinidia spp.) exhibit large differences in response to insect pests. An understanding of the vine's physiological response to insect feeding and its genetic basis will be important in assisting the development of varieties with acceptable levels of pest resistance. This experiment describes transcriptome changes observed in the bark of kiwifruit 2 and 7 days after the commencement of feeding by the armored scale insect pest, Hemiberlesia lataniae. Using a cDNA microarray consisting of 17,512 unigenes, we measured transcriptome changes and analyzed these into functional ontology categories using MapMan. Results are available in the GEO database GSE73922 and are described fully in Ref. Hill et al. (2015) [1]. After 7 days, transcripts associated with photosynthesis were down-regulated and secondary metabolism was up-regulated. Differential expression of transcripts associated with stress response was consistent with a defense response involving both effector and herbivore-triggered immunities, with predominant involvement of the salicylic acid phytohormonal pathway. This hypothesis was supported by the results of two laboratory experiments. The methods described here could be further adapted and applied to the study of plant responses to a wide range of sessile sucking pests. Elsevier 2016-02-02 /pmc/articles/PMC4778680/ /pubmed/26981426 http://dx.doi.org/10.1016/j.gdata.2016.01.016 Text en © 2016 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data in Brief Hill, M. Garry Wurms, Kirstin V. Davy, Marcus W. Gould, Elaine Allan, Andrew Mauchline, Nicola A. Luo, Zhiwei Ah Chee, Annette Stannard, Kate Storey, Roy D. Rikkerink, Erik H. Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae) |
title | Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae) |
title_full | Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae) |
title_fullStr | Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae) |
title_full_unstemmed | Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae) |
title_short | Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae) |
title_sort | microarray analysis of kiwifruit (actinidia chinensis) bark following challenge by the sucking insect hemiberlesia lataniae (hemiptera: diaspididae) |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778680/ https://www.ncbi.nlm.nih.gov/pubmed/26981426 http://dx.doi.org/10.1016/j.gdata.2016.01.016 |
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