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Data for global lysine-acetylation analysis in rice (Oryza sativa)
Rice is one of the most important crops for human consumption and is a staple food for over half of the world׳s population (Yu et al., 2002) [1]. A systematic identification of the lysine acetylome was performed by our research (Xiong et al., 2016) [2]. Rice plant samples were collected from 5 weeks...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4781998/ https://www.ncbi.nlm.nih.gov/pubmed/26977447 http://dx.doi.org/10.1016/j.dib.2016.02.032 |
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author | Xiong, Yehui Zhang, Kai Cheng, Zhongyi Wang, Guo-Liang Liu, Wende |
author_facet | Xiong, Yehui Zhang, Kai Cheng, Zhongyi Wang, Guo-Liang Liu, Wende |
author_sort | Xiong, Yehui |
collection | PubMed |
description | Rice is one of the most important crops for human consumption and is a staple food for over half of the world׳s population (Yu et al., 2002) [1]. A systematic identification of the lysine acetylome was performed by our research (Xiong et al., 2016) [2]. Rice plant samples were collected from 5 weeks old seedlings (Oryza sativa, Nipponbare). After the trypsin digestion and immunoaffinity precipitation, LC–MS/MS approach was used to identify acetylated peptides. After the collected MS/MS data procession and GO annotation, the InterProScan was used to annotate protein domain. Subcellular localization of the identified acetylated proteins was predicted by WoLF PSORT. The KEGG pathway database was used to annotate identified acetylated protein interactions, reactions, and relations. The data, supplied in this article, are related to “A comprehensive catalog of the lysine-acetylation targets in rice (O. sativa) based on proteomic analyses” by Xiong et al. (2016) [2]. |
format | Online Article Text |
id | pubmed-4781998 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-47819982016-03-14 Data for global lysine-acetylation analysis in rice (Oryza sativa) Xiong, Yehui Zhang, Kai Cheng, Zhongyi Wang, Guo-Liang Liu, Wende Data Brief Data Article Rice is one of the most important crops for human consumption and is a staple food for over half of the world׳s population (Yu et al., 2002) [1]. A systematic identification of the lysine acetylome was performed by our research (Xiong et al., 2016) [2]. Rice plant samples were collected from 5 weeks old seedlings (Oryza sativa, Nipponbare). After the trypsin digestion and immunoaffinity precipitation, LC–MS/MS approach was used to identify acetylated peptides. After the collected MS/MS data procession and GO annotation, the InterProScan was used to annotate protein domain. Subcellular localization of the identified acetylated proteins was predicted by WoLF PSORT. The KEGG pathway database was used to annotate identified acetylated protein interactions, reactions, and relations. The data, supplied in this article, are related to “A comprehensive catalog of the lysine-acetylation targets in rice (O. sativa) based on proteomic analyses” by Xiong et al. (2016) [2]. Elsevier 2016-02-20 /pmc/articles/PMC4781998/ /pubmed/26977447 http://dx.doi.org/10.1016/j.dib.2016.02.032 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Xiong, Yehui Zhang, Kai Cheng, Zhongyi Wang, Guo-Liang Liu, Wende Data for global lysine-acetylation analysis in rice (Oryza sativa) |
title | Data for global lysine-acetylation analysis in rice (Oryza sativa) |
title_full | Data for global lysine-acetylation analysis in rice (Oryza sativa) |
title_fullStr | Data for global lysine-acetylation analysis in rice (Oryza sativa) |
title_full_unstemmed | Data for global lysine-acetylation analysis in rice (Oryza sativa) |
title_short | Data for global lysine-acetylation analysis in rice (Oryza sativa) |
title_sort | data for global lysine-acetylation analysis in rice (oryza sativa) |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4781998/ https://www.ncbi.nlm.nih.gov/pubmed/26977447 http://dx.doi.org/10.1016/j.dib.2016.02.032 |
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