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Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge

In the dark ocean, the SAR324 group of Delta-proteobacteria has been associated with a chemolithotrophic lifestyle. However, their electron transport chain for energy generation and information system has not yet been well characterized. In the present study, four SAR324 draft genomes were extracted...

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Autores principales: Cao, Huiluo, Dong, Chunming, Bougouffa, Salim, Li, Jiangtao, Zhang, Weipeng, Shao, Zongze, Bajic, Vladimir B., Qian, Pei-Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4782131/
https://www.ncbi.nlm.nih.gov/pubmed/26953077
http://dx.doi.org/10.1038/srep22842
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author Cao, Huiluo
Dong, Chunming
Bougouffa, Salim
Li, Jiangtao
Zhang, Weipeng
Shao, Zongze
Bajic, Vladimir B.
Qian, Pei-Yuan
author_facet Cao, Huiluo
Dong, Chunming
Bougouffa, Salim
Li, Jiangtao
Zhang, Weipeng
Shao, Zongze
Bajic, Vladimir B.
Qian, Pei-Yuan
author_sort Cao, Huiluo
collection PubMed
description In the dark ocean, the SAR324 group of Delta-proteobacteria has been associated with a chemolithotrophic lifestyle. However, their electron transport chain for energy generation and information system has not yet been well characterized. In the present study, four SAR324 draft genomes were extracted from metagenomes sampled from hydrothermal plumes in the South Mid-Atlantic Ridge. We describe novel electron transport chain components in the SAR324 group, particularly the alternative complex III, which is involved in energy generation. Moreover, we propose that the C-type cytochrome, for example the C(553), may play a novel role in electron transfer, adding to our knowledge regarding the energy generation process in the SAR324 cluster. The central carbon metabolism in the described SAR324 genomes exhibits several new features other than methanotrophy e.g. aromatic compound degradation. This suggests that methane oxidation may not be the main central carbon metabolism component in SAR324 cluster bacteria. The reductive acetyl-CoA pathway may potentially be essential in carbon fixation due to the absence of components from the Calvin-Benson cycle. Our study provides insight into the role of recombination events in shaping the genome of the SAR324 group based on a larger number of repeat regions observed, which has been overlooked thus far.
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spelling pubmed-47821312016-03-10 Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge Cao, Huiluo Dong, Chunming Bougouffa, Salim Li, Jiangtao Zhang, Weipeng Shao, Zongze Bajic, Vladimir B. Qian, Pei-Yuan Sci Rep Article In the dark ocean, the SAR324 group of Delta-proteobacteria has been associated with a chemolithotrophic lifestyle. However, their electron transport chain for energy generation and information system has not yet been well characterized. In the present study, four SAR324 draft genomes were extracted from metagenomes sampled from hydrothermal plumes in the South Mid-Atlantic Ridge. We describe novel electron transport chain components in the SAR324 group, particularly the alternative complex III, which is involved in energy generation. Moreover, we propose that the C-type cytochrome, for example the C(553), may play a novel role in electron transfer, adding to our knowledge regarding the energy generation process in the SAR324 cluster. The central carbon metabolism in the described SAR324 genomes exhibits several new features other than methanotrophy e.g. aromatic compound degradation. This suggests that methane oxidation may not be the main central carbon metabolism component in SAR324 cluster bacteria. The reductive acetyl-CoA pathway may potentially be essential in carbon fixation due to the absence of components from the Calvin-Benson cycle. Our study provides insight into the role of recombination events in shaping the genome of the SAR324 group based on a larger number of repeat regions observed, which has been overlooked thus far. Nature Publishing Group 2016-03-08 /pmc/articles/PMC4782131/ /pubmed/26953077 http://dx.doi.org/10.1038/srep22842 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Cao, Huiluo
Dong, Chunming
Bougouffa, Salim
Li, Jiangtao
Zhang, Weipeng
Shao, Zongze
Bajic, Vladimir B.
Qian, Pei-Yuan
Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge
title Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge
title_full Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge
title_fullStr Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge
title_full_unstemmed Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge
title_short Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge
title_sort delta-proteobacterial sar324 group in hydrothermal plumes on the south mid-atlantic ridge
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4782131/
https://www.ncbi.nlm.nih.gov/pubmed/26953077
http://dx.doi.org/10.1038/srep22842
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