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Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis

Plant lectins have been investigated to elucidate their complicated mechanisms due to their remarkable anticancer activities. Although plant lectins seems promising as a potential anticancer agent for further preclinical and clinical uses, further research is still urgently needed and should include...

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Detalles Bibliográficos
Autores principales: Shi, Zheng, Sun, Rong, Yu, Tian, Liu, Rong, Cheng, Li-Jia, Bao, Jin-Ku, Zou, Liang, Tang, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4783960/
https://www.ncbi.nlm.nih.gov/pubmed/26867193
http://dx.doi.org/10.3390/ijms17020228
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author Shi, Zheng
Sun, Rong
Yu, Tian
Liu, Rong
Cheng, Li-Jia
Bao, Jin-Ku
Zou, Liang
Tang, Yong
author_facet Shi, Zheng
Sun, Rong
Yu, Tian
Liu, Rong
Cheng, Li-Jia
Bao, Jin-Ku
Zou, Liang
Tang, Yong
author_sort Shi, Zheng
collection PubMed
description Plant lectins have been investigated to elucidate their complicated mechanisms due to their remarkable anticancer activities. Although plant lectins seems promising as a potential anticancer agent for further preclinical and clinical uses, further research is still urgently needed and should include more focus on molecular mechanisms. Herein, a Naïve Bayesian model was developed to predict the protein-protein interaction (PPI), and thus construct the global human PPI network. Moreover, multiple sources of biological data, such as smallest shared biological process (SSBP), domain-domain interaction (DDI), gene co-expression profiles and cross-species interolog mapping were integrated to build the core apoptotic PPI network. In addition, we further modified it into a plant lectin-induced apoptotic cell death context. Then, we identified 22 apoptotic hub proteins in mesothelioma cells according to their different microarray expressions. Subsequently, we used combinational methods to predict microRNAs (miRNAs) which could negatively regulate the abovementioned hub proteins. Together, we demonstrated the ability of our Naïve Bayesian model-based network for identifying novel plant lectin-treated cancer cell apoptotic pathways. These findings may provide new clues concerning plant lectins as potential apoptotic inducers for cancer drug discovery.
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spelling pubmed-47839602016-03-14 Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis Shi, Zheng Sun, Rong Yu, Tian Liu, Rong Cheng, Li-Jia Bao, Jin-Ku Zou, Liang Tang, Yong Int J Mol Sci Article Plant lectins have been investigated to elucidate their complicated mechanisms due to their remarkable anticancer activities. Although plant lectins seems promising as a potential anticancer agent for further preclinical and clinical uses, further research is still urgently needed and should include more focus on molecular mechanisms. Herein, a Naïve Bayesian model was developed to predict the protein-protein interaction (PPI), and thus construct the global human PPI network. Moreover, multiple sources of biological data, such as smallest shared biological process (SSBP), domain-domain interaction (DDI), gene co-expression profiles and cross-species interolog mapping were integrated to build the core apoptotic PPI network. In addition, we further modified it into a plant lectin-induced apoptotic cell death context. Then, we identified 22 apoptotic hub proteins in mesothelioma cells according to their different microarray expressions. Subsequently, we used combinational methods to predict microRNAs (miRNAs) which could negatively regulate the abovementioned hub proteins. Together, we demonstrated the ability of our Naïve Bayesian model-based network for identifying novel plant lectin-treated cancer cell apoptotic pathways. These findings may provide new clues concerning plant lectins as potential apoptotic inducers for cancer drug discovery. MDPI 2016-02-08 /pmc/articles/PMC4783960/ /pubmed/26867193 http://dx.doi.org/10.3390/ijms17020228 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons by Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Shi, Zheng
Sun, Rong
Yu, Tian
Liu, Rong
Cheng, Li-Jia
Bao, Jin-Ku
Zou, Liang
Tang, Yong
Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis
title Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis
title_full Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis
title_fullStr Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis
title_full_unstemmed Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis
title_short Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis
title_sort identification of novel pathways in plant lectin-induced cancer cell apoptosis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4783960/
https://www.ncbi.nlm.nih.gov/pubmed/26867193
http://dx.doi.org/10.3390/ijms17020228
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